Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0315

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0314 and Rru_A0315 are separated by 7 nucleotidesRru_A0315 and Rru_A0316 are separated by 13 nucleotides Rru_A0314: Rru_A0314 - NADH dehydrogenase (quinone) (NCBI), at 382,129 to 383,646 _A0314 Rru_A0315: Rru_A0315 - NADH dehydrogenase (quinone) (NCBI), at 383,654 to 385,678 _A0315 Rru_A0316: Rru_A0316 - NADH-ubiquinone oxidoreductase (NCBI), at 385,692 to 387,377 _A0316 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.663 kb on + strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.664 kb on - strand, within Rru_A0314at 382.693 kb on + strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.694 kb on - strand, within Rru_A0314at 382.695 kb on + strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.696 kb on - strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.756 kb on + strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.757 kb on - strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.924 kb on + strand, within Rru_A0314at 382.925 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 382.961 kb on - strand, within Rru_A0314at 383.065 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.125 kb on + strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314at 383.126 kb on - strand, within Rru_A0314at 383.252 kb on - strand, within Rru_A0314at 383.252 kb on - strand, within Rru_A0314at 383.383 kb on + strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.384 kb on - strand, within Rru_A0314at 383.821 kb on - strandat 383.951 kb on + strand, within Rru_A0315at 383.952 kb on - strand, within Rru_A0315at 383.952 kb on - strand, within Rru_A0315at 383.963 kb on + strand, within Rru_A0315at 383.963 kb on + strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 383.964 kb on - strand, within Rru_A0315at 384.000 kb on - strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.002 kb on + strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.003 kb on - strand, within Rru_A0315at 384.161 kb on + strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.162 kb on - strand, within Rru_A0315at 384.300 kb on - strand, within Rru_A0315at 384.310 kb on + strand, within Rru_A0315at 384.310 kb on + strand, within Rru_A0315at 384.443 kb on + strand, within Rru_A0315at 384.443 kb on + strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.444 kb on - strand, within Rru_A0315at 384.617 kb on + strand, within Rru_A0315at 384.617 kb on + strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.618 kb on - strand, within Rru_A0315at 384.701 kb on + strand, within Rru_A0315at 384.702 kb on - strand, within Rru_A0315at 384.702 kb on - strand, within Rru_A0315at 384.916 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.007 kb on + strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.008 kb on - strand, within Rru_A0315at 385.433 kb on + strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.434 kb on - strand, within Rru_A0315at 385.445 kb on - strand, within Rru_A0315at 385.445 kb on - strand, within Rru_A0315at 385.541 kb on + strandat 385.542 kb on - strandat 385.542 kb on - strandat 385.597 kb on + strandat 385.597 kb on + strandat 385.616 kb on + strandat 385.616 kb on + strandat 385.617 kb on - strandat 385.617 kb on - strandat 385.783 kb on - strandat 385.783 kb on - strandat 385.824 kb on + strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.825 kb on - strandat 385.896 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.908 kb on + strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 385.909 kb on - strand, within Rru_A0316at 386.034 kb on + strand, within Rru_A0316at 386.035 kb on - strand, within Rru_A0316at 386.035 kb on - strand, within Rru_A0316at 386.263 kb on - strand, within Rru_A0316at 386.263 kb on - strand, within Rru_A0316at 386.351 kb on + strand, within Rru_A0316at 386.352 kb on - strand, within Rru_A0316at 386.352 kb on - strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.364 kb on + strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.365 kb on - strand, within Rru_A0316at 386.366 kb on + strand, within Rru_A0316at 386.367 kb on - strand, within Rru_A0316at 386.430 kb on + strand, within Rru_A0316at 386.430 kb on + strand, within Rru_A0316at 386.431 kb on - strand, within Rru_A0316at 386.484 kb on + strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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382,663 + Rru_A0314 0.35 -2.0
382,663 + Rru_A0314 0.35 +0.0
382,663 + Rru_A0314 0.35 +0.0
382,663 + Rru_A0314 0.35 -2.4
382,663 + Rru_A0314 0.35 +0.0
382,663 + Rru_A0314 0.35 +0.0
382,663 + Rru_A0314 0.35 +0.0
382,664 - Rru_A0314 0.35 +0.0
382,664 - Rru_A0314 0.35 +0.0
382,693 + Rru_A0314 0.37 -2.0
382,694 - Rru_A0314 0.37 +0.0
382,694 - Rru_A0314 0.37 -2.5
382,695 + Rru_A0314 0.37 +0.0
382,696 - Rru_A0314 0.37 -2.5
382,696 - Rru_A0314 0.37 -1.9
382,756 + Rru_A0314 0.41 -1.6
382,756 + Rru_A0314 0.41 -2.0
382,756 + Rru_A0314 0.41 +0.0
382,757 - Rru_A0314 0.41 -2.0
382,757 - Rru_A0314 0.41 -2.6
382,757 - Rru_A0314 0.41 +0.0
382,757 - Rru_A0314 0.41 +0.0
382,757 - Rru_A0314 0.41 -1.6
382,757 - Rru_A0314 0.41 +0.0
382,924 + Rru_A0314 0.52 +0.0
382,924 + Rru_A0314 0.52 +0.0
382,925 - Rru_A0314 0.52 +0.0
382,961 - Rru_A0314 0.55 -1.7
382,961 - Rru_A0314 0.55 +0.0
383,065 + Rru_A0314 0.62 -2.4
383,125 + Rru_A0314 0.66 +0.0
383,125 + Rru_A0314 0.66 +0.0
383,126 - Rru_A0314 0.66 +0.0
383,126 - Rru_A0314 0.66 -1.9
383,252 - Rru_A0314 0.74 +0.0
383,252 - Rru_A0314 0.74 +0.0
383,383 + Rru_A0314 0.83 +0.0
383,384 - Rru_A0314 0.83 +0.0
383,384 - Rru_A0314 0.83 +0.0
383,384 - Rru_A0314 0.83 -1.7
383,821 - -1.0
383,951 + Rru_A0315 0.15 +0.0
383,952 - Rru_A0315 0.15 +0.0
383,952 - Rru_A0315 0.15 +0.0
383,963 + Rru_A0315 0.15 +0.0
383,963 + Rru_A0315 0.15 +0.0
383,964 - Rru_A0315 0.15 -1.6
383,964 - Rru_A0315 0.15 +0.0
383,964 - Rru_A0315 0.15 -2.3
383,964 - Rru_A0315 0.15 +0.0
384,000 - Rru_A0315 0.17 +0.0
384,002 + Rru_A0315 0.17 +0.0
384,002 + Rru_A0315 0.17 +0.0
384,002 + Rru_A0315 0.17 +0.0
384,003 - Rru_A0315 0.17 -1.8
384,003 - Rru_A0315 0.17 -1.0
384,003 - Rru_A0315 0.17 +0.0
384,003 - Rru_A0315 0.17 +0.0
384,003 - Rru_A0315 0.17 +0.0
384,161 + Rru_A0315 0.25 +0.0
384,162 - Rru_A0315 0.25 -1.6
384,162 - Rru_A0315 0.25 +0.0
384,162 - Rru_A0315 0.25 +0.0
384,300 - Rru_A0315 0.32 -2.1
384,310 + Rru_A0315 0.32 -1.8
384,310 + Rru_A0315 0.32 -1.0
384,443 + Rru_A0315 0.39 -3.5
384,443 + Rru_A0315 0.39 +0.0
384,444 - Rru_A0315 0.39 +0.0
384,444 - Rru_A0315 0.39 +0.0
384,444 - Rru_A0315 0.39 -2.0
384,444 - Rru_A0315 0.39 +0.0
384,617 + Rru_A0315 0.48 -2.0
384,617 + Rru_A0315 0.48 -3.7
384,618 - Rru_A0315 0.48 +0.0
384,618 - Rru_A0315 0.48 +0.0
384,618 - Rru_A0315 0.48 +0.0
384,618 - Rru_A0315 0.48 +0.0
384,618 - Rru_A0315 0.48 +0.0
384,618 - Rru_A0315 0.48 -1.9
384,701 + Rru_A0315 0.52 +0.0
384,702 - Rru_A0315 0.52 -4.1
384,702 - Rru_A0315 0.52 -0.6
384,916 + Rru_A0315 0.62 +0.0
385,007 + Rru_A0315 0.67 +0.0
385,007 + Rru_A0315 0.67 +0.0
385,007 + Rru_A0315 0.67 +0.0
385,007 + Rru_A0315 0.67 +0.0
385,007 + Rru_A0315 0.67 +0.0
385,008 - Rru_A0315 0.67 -2.6
385,008 - Rru_A0315 0.67 -2.2
385,008 - Rru_A0315 0.67 -2.2
385,008 - Rru_A0315 0.67 -2.9
385,433 + Rru_A0315 0.88 -2.8
385,434 - Rru_A0315 0.88 +0.0
385,434 - Rru_A0315 0.88 +0.0
385,434 - Rru_A0315 0.88 +0.0
385,445 - Rru_A0315 0.88 -2.8
385,445 - Rru_A0315 0.88 +0.0
385,541 + +0.0
385,542 - -1.8
385,542 - +0.0
385,597 + +0.0
385,597 + -2.3
385,616 + +0.0
385,616 + +0.0
385,617 - -2.1
385,617 - +0.0
385,783 - +0.0
385,783 - +0.0
385,824 + +0.0
385,825 - +0.0
385,825 - +0.0
385,825 - +0.0
385,825 - +0.0
385,896 + Rru_A0316 0.12 +0.0
385,908 + Rru_A0316 0.13 +0.0
385,908 + Rru_A0316 0.13 +0.0
385,908 + Rru_A0316 0.13 +0.0
385,908 + Rru_A0316 0.13 -2.4
385,909 - Rru_A0316 0.13 +0.0
385,909 - Rru_A0316 0.13 +0.0
385,909 - Rru_A0316 0.13 +0.0
385,909 - Rru_A0316 0.13 +0.0
386,034 + Rru_A0316 0.20 +0.0
386,035 - Rru_A0316 0.20 +0.0
386,035 - Rru_A0316 0.20 +0.0
386,263 - Rru_A0316 0.34 +0.0
386,263 - Rru_A0316 0.34 +0.0
386,351 + Rru_A0316 0.39 +0.0
386,352 - Rru_A0316 0.39 +0.0
386,352 - Rru_A0316 0.39 -1.0
386,364 + Rru_A0316 0.40 +0.0
386,364 + Rru_A0316 0.40 -2.5
386,364 + Rru_A0316 0.40 +0.0
386,365 - Rru_A0316 0.40 -2.4
386,365 - Rru_A0316 0.40 +0.0
386,365 - Rru_A0316 0.40 +0.0
386,366 + Rru_A0316 0.40 -2.5
386,367 - Rru_A0316 0.40 -1.7
386,430 + Rru_A0316 0.44 +0.0
386,430 + Rru_A0316 0.44 +0.0
386,431 - Rru_A0316 0.44 -3.8
386,484 + Rru_A0316 0.47 +0.0
386,485 - Rru_A0316 0.47 +0.0
386,485 - Rru_A0316 0.47 +0.0
386,556 + Rru_A0316 0.51 +0.0
386,556 + Rru_A0316 0.51 +0.0
386,557 - Rru_A0316 0.51 +0.0
386,557 - Rru_A0316 0.51 +0.0
386,557 - Rru_A0316 0.51 +0.0
386,557 - Rru_A0316 0.51 +0.0
386,649 + Rru_A0316 0.57 +0.0
386,649 + Rru_A0316 0.57 +0.0
386,650 - Rru_A0316 0.57 +0.0
386,650 - Rru_A0316 0.57 -1.9

Or see this region's nucleotide sequence