Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0235 and Rru_A0236 are separated by 293 nucleotides Rru_A0236 and Rru_A0237 are separated by 1 nucleotides Rru_A0237 and Rru_A0238 are separated by 99 nucleotides Rru_A0238 and Rru_A0239 are separated by 61 nucleotides Rru_A0239 and Rru_A0240 are separated by 12 nucleotides
Rru_A0235: Rru_A0235 - preprotein translocase subunit SecA (RefSeq), at 290,261 to 292,951
_A0235
Rru_A0236: Rru_A0236 - Camphor resistance CrcB protein (NCBI), at 293,245 to 293,634
_A0236
Rru_A0237: Rru_A0237 - Protein of unknown function DUF190 (NCBI), at 293,636 to 293,992
_A0237
Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277
_A0238
Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563
_A0239
Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127
_A0240
Position (kb) 293
294 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 292.922 kb on + strand at 292.922 kb on + strand at 292.922 kb on + strand at 292.922 kb on + strand at 292.922 kb on + strand at 293.026 kb on + strand at 293.066 kb on + strand at 293.066 kb on + strand at 293.067 kb on - strand at 293.080 kb on + strand at 293.231 kb on - strand at 293.231 kb on - strand at 293.251 kb on + strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.252 kb on - strand at 293.255 kb on + strand at 293.256 kb on - strand at 293.364 kb on + strand, within Rru_A0236 at 293.364 kb on + strand, within Rru_A0236 at 293.364 kb on + strand, within Rru_A0236 at 293.478 kb on + strand, within Rru_A0236 at 293.478 kb on + strand, within Rru_A0236 at 293.479 kb on - strand, within Rru_A0236 at 293.479 kb on - strand, within Rru_A0236 at 293.630 kb on + strand at 293.631 kb on - strand at 293.690 kb on + strand, within Rru_A0237 at 293.691 kb on - strand, within Rru_A0237 at 293.691 kb on - strand, within Rru_A0237 at 293.692 kb on + strand, within Rru_A0237 at 294.054 kb on - strand at 294.071 kb on - strand at 294.163 kb on + strand, within Rru_A0238 at 294.164 kb on - strand, within Rru_A0238 at 294.164 kb on - strand, within Rru_A0238 at 294.164 kb on - strand, within Rru_A0238 at 294.492 kb on + strand, within Rru_A0239 at 294.492 kb on + strand, within Rru_A0239 at 294.492 kb on + strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.493 kb on - strand, within Rru_A0239 at 294.494 kb on + strand, within Rru_A0239 at 294.494 kb on + strand, within Rru_A0239 at 294.495 kb on - strand, within Rru_A0239 at 294.495 kb on - strand, within Rru_A0239 at 294.516 kb on + strand, within Rru_A0239 at 294.518 kb on + strand, within Rru_A0239 at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.543 kb on + strand at 294.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 292,922 + -2.2 292,922 + +0.0 292,922 + -2.1 292,922 + +0.0 292,922 + +0.0 293,026 + +0.0 293,066 + +0.0 293,066 + +0.0 293,067 - +0.0 293,080 + +0.0 293,231 - +0.0 293,231 - +0.0 293,251 + -2.0 293,252 - -2.4 293,252 - +0.0 293,252 - +0.0 293,252 - +0.0 293,252 - +0.0 293,252 - -1.0 293,252 - +0.0 293,252 - -1.0 293,252 - +0.0 293,252 - +0.0 293,255 + -2.2 293,256 - -2.4 293,364 + Rru_A0236 0.31 +0.0 293,364 + Rru_A0236 0.31 +0.0 293,364 + Rru_A0236 0.31 +0.0 293,478 + Rru_A0236 0.60 -3.1 293,478 + Rru_A0236 0.60 +0.0 293,479 - Rru_A0236 0.60 +0.0 293,479 - Rru_A0236 0.60 -2.8 293,630 + +0.0 293,631 - +0.0 293,690 + Rru_A0237 0.15 -2.2 293,691 - Rru_A0237 0.15 +0.0 293,691 - Rru_A0237 0.15 -2.8 293,692 + Rru_A0237 0.16 +0.0 294,054 - +0.0 294,071 - +0.0 294,163 + Rru_A0238 0.38 +0.0 294,164 - Rru_A0238 0.39 +0.0 294,164 - Rru_A0238 0.39 +0.0 294,164 - Rru_A0238 0.39 +0.0 294,492 + Rru_A0239 0.68 +0.0 294,492 + Rru_A0239 0.68 -3.9 294,492 + Rru_A0239 0.68 -1.0 294,493 - Rru_A0239 0.68 +0.0 294,493 - Rru_A0239 0.68 +0.0 294,493 - Rru_A0239 0.68 +0.0 294,493 - Rru_A0239 0.68 -2.2 294,493 - Rru_A0239 0.68 +0.0 294,494 + Rru_A0239 0.69 +0.0 294,494 + Rru_A0239 0.69 +0.0 294,495 - Rru_A0239 0.69 +0.0 294,495 - Rru_A0239 0.69 +0.0 294,516 + Rru_A0239 0.79 -2.6 294,518 + Rru_A0239 0.80 +0.0 294,543 + +0.0 294,543 + +0.0 294,543 + -2.8 294,543 + +0.0 294,543 + +0.0 294,543 + +0.0 294,543 + +0.0 294,543 + +0.0 294,544 - +0.0
Or see this region's nucleotide sequence