Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0213

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0211 and Rru_A0212 are separated by 93 nucleotidesRru_A0212 and Rru_A0213 are separated by 3 nucleotidesRru_A0213 and Rru_A0214 are separated by 402 nucleotides Rru_A0211: Rru_A0211 - hypothetical protein (NCBI), at 263,151 to 263,912 _A0211 Rru_A0212: Rru_A0212 - hypothetical protein (NCBI), at 264,006 to 264,392 _A0212 Rru_A0213: Rru_A0213 - hypothetical protein (NCBI), at 264,396 to 265,736 _A0213 Rru_A0214: Rru_A0214 - MutT/nudix family protein (NCBI), at 266,139 to 267,017 _A0214 Position (kb) 264 265 266Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 263.431 kb on + strand, within Rru_A0211at 263.432 kb on - strand, within Rru_A0211at 263.432 kb on - strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.702 kb on + strand, within Rru_A0211at 263.703 kb on - strand, within Rru_A0211at 263.703 kb on - strand, within Rru_A0211at 263.973 kb on + strandat 263.980 kb on - strandat 264.007 kb on + strandat 264.007 kb on + strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.184 kb on - strand, within Rru_A0212at 264.397 kb on + strandat 264.397 kb on + strandat 265.155 kb on - strand, within Rru_A0213at 265.258 kb on + strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213at 265.259 kb on - strand, within Rru_A0213at 265.807 kb on + strandat 265.808 kb on - strandat 265.816 kb on - strandat 265.826 kb on - strandat 265.849 kb on + strandat 265.849 kb on + strandat 266.158 kb on + strandat 266.158 kb on + strandat 266.158 kb on + strandat 266.487 kb on + strand, within Rru_A0214at 266.488 kb on - strand, within Rru_A0214at 266.488 kb on - strand, within Rru_A0214at 266.562 kb on - strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.591 kb on + strand, within Rru_A0214at 266.715 kb on + strand, within Rru_A0214at 266.715 kb on + strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214at 266.716 kb on - strand, within Rru_A0214

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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263,431 + Rru_A0211 0.37 +0.0
263,432 - Rru_A0211 0.37 +0.0
263,432 - Rru_A0211 0.37 +0.0
263,702 + Rru_A0211 0.72 -2.9
263,702 + Rru_A0211 0.72 -1.0
263,702 + Rru_A0211 0.72 +0.0
263,703 - Rru_A0211 0.72 +0.0
263,703 - Rru_A0211 0.72 +0.0
263,973 + +0.0
263,980 - -2.2
264,007 + +0.0
264,007 + +0.0
264,008 - -3.1
264,008 - -2.5
264,184 - Rru_A0212 0.46 +0.0
264,397 + +0.0
264,397 + -1.1
265,155 - Rru_A0213 0.57 +0.0
265,258 + Rru_A0213 0.64 -2.5
265,259 - Rru_A0213 0.64 -3.6
265,259 - Rru_A0213 0.64 +0.0
265,807 + -3.8
265,808 - +0.0
265,816 - -1.3
265,826 - -2.3
265,849 + +0.0
265,849 + +0.0
266,158 + +0.0
266,158 + +0.0
266,158 + +0.0
266,487 + Rru_A0214 0.40 +0.0
266,488 - Rru_A0214 0.40 +0.0
266,488 - Rru_A0214 0.40 +0.0
266,562 - Rru_A0214 0.48 +0.0
266,591 + Rru_A0214 0.51 +0.0
266,591 + Rru_A0214 0.51 +0.0
266,591 + Rru_A0214 0.51 +0.0
266,715 + Rru_A0214 0.66 +0.0
266,715 + Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 -2.3
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 -2.4
266,716 - Rru_A0214 0.66 +0.0
266,716 - Rru_A0214 0.66 +0.0

Or see this region's nucleotide sequence