Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0137 and Rru_A0138 are separated by 25 nucleotides Rru_A0138 and Rru_A0139 are separated by 278 nucleotides Rru_A0139 and Rru_A0140 are separated by 72 nucleotides
Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587
_A0137
Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004
_A0138
Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636
_A0139
Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479
_A0140
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.685 kb on + strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.951 kb on + strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.537 kb on + strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.838 kb on + strand, within Rru_A0138 at 161.839 kb on - strand, within Rru_A0138 at 161.880 kb on + strand, within Rru_A0138 at 161.952 kb on + strand, within Rru_A0138 at 161.953 kb on - strand, within Rru_A0138 at 162.083 kb on + strand, within Rru_A0138 at 162.084 kb on - strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.371 kb on + strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.542 kb on + strand, within Rru_A0138 at 162.543 kb on - strand, within Rru_A0138 at 162.667 kb on + strand, within Rru_A0138 at 162.667 kb on + strand, within Rru_A0138 at 162.668 kb on - strand, within Rru_A0138 at 163.061 kb on + strand at 163.138 kb on + strand at 163.156 kb on + strand at 163.157 kb on - strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.166 kb on + strand at 163.195 kb on + strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.268 kb on + strand at 163.320 kb on + strand, within Rru_A0139 at 163.321 kb on - strand, within Rru_A0139 at 163.403 kb on + strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.517 kb on - strand, within Rru_A0139 at 163.676 kb on - strand at 163.676 kb on - strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.687 kb on - strand at 163.717 kb on + strand at 163.718 kb on - strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.731 kb on - strand at 163.731 kb on - strand at 163.776 kb on - strand at 163.776 kb on - strand at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.829 kb on + strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.967 kb on - strand, within Rru_A0140
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 160,685 + Rru_A0137 0.14 +0.0 160,686 - Rru_A0137 0.14 -1.4 160,686 - Rru_A0137 0.14 +0.0 160,816 + Rru_A0137 0.27 +0.0 160,816 + Rru_A0137 0.27 +0.0 160,887 - Rru_A0137 0.33 +0.0 160,887 - Rru_A0137 0.33 +0.0 160,887 - Rru_A0137 0.33 +0.0 160,888 + Rru_A0137 0.34 +0.0 160,888 + Rru_A0137 0.34 +0.0 160,949 + Rru_A0137 0.39 -0.7 160,949 + Rru_A0137 0.39 -2.1 160,949 + Rru_A0137 0.39 +0.0 160,949 + Rru_A0137 0.39 -1.6 160,950 - Rru_A0137 0.39 -1.0 160,950 - Rru_A0137 0.39 +0.0 160,950 - Rru_A0137 0.39 +0.0 160,950 - Rru_A0137 0.39 -2.8 160,951 + Rru_A0137 0.40 +0.0 160,952 - Rru_A0137 0.40 +0.0 160,952 - Rru_A0137 0.40 +0.0 160,952 - Rru_A0137 0.40 +0.0 161,321 + Rru_A0137 0.75 +0.0 161,321 + Rru_A0137 0.75 +0.0 161,322 - Rru_A0137 0.75 +0.0 161,322 - Rru_A0137 0.75 -3.0 161,537 + +0.0 161,538 - +0.0 161,538 - +0.0 161,538 - -1.8 161,538 - -2.2 161,838 + Rru_A0138 0.16 +0.0 161,839 - Rru_A0138 0.16 -2.5 161,880 + Rru_A0138 0.19 +0.0 161,952 + Rru_A0138 0.24 +0.0 161,953 - Rru_A0138 0.24 +0.0 162,083 + Rru_A0138 0.34 +0.0 162,084 - Rru_A0138 0.34 +0.0 162,198 + Rru_A0138 0.42 -2.7 162,198 + Rru_A0138 0.42 +0.0 162,198 + Rru_A0138 0.42 -2.8 162,198 + Rru_A0138 0.42 +0.0 162,199 - Rru_A0138 0.42 +0.0 162,199 - Rru_A0138 0.42 +0.0 162,199 - Rru_A0138 0.42 +0.0 162,199 - Rru_A0138 0.42 -2.4 162,371 + Rru_A0138 0.54 +0.0 162,372 - Rru_A0138 0.55 -2.3 162,372 - Rru_A0138 0.55 +0.0 162,542 + Rru_A0138 0.67 -2.6 162,543 - Rru_A0138 0.67 +0.0 162,667 + Rru_A0138 0.76 +0.0 162,667 + Rru_A0138 0.76 +0.0 162,668 - Rru_A0138 0.76 +0.0 163,061 + +0.0 163,138 + +0.0 163,156 + +0.0 163,157 - -2.0 163,163 + +0.0 163,163 + +0.0 163,163 + +0.0 163,164 - +0.0 163,164 - +0.0 163,164 - +0.0 163,166 + +0.0 163,195 + +0.0 163,196 - +0.0 163,196 - +0.0 163,196 - +0.0 163,268 + +0.0 163,320 + Rru_A0139 0.10 -1.0 163,321 - Rru_A0139 0.11 +0.0 163,403 + Rru_A0139 0.34 -2.3 163,404 - Rru_A0139 0.34 +0.0 163,404 - Rru_A0139 0.34 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,517 - Rru_A0139 0.66 +0.0 163,676 - +0.0 163,676 - -1.0 163,684 + +0.0 163,684 + -1.5 163,684 + +0.0 163,684 + +0.0 163,684 + +0.0 163,685 - -2.2 163,685 - +0.0 163,685 - +0.0 163,685 - -2.0 163,685 - +0.0 163,685 - +0.0 163,685 - +0.0 163,685 - -1.6 163,687 - -2.3 163,717 + +0.0 163,718 - -1.7 163,730 + +0.0 163,730 + +0.0 163,730 + -1.0 163,731 - -2.2 163,731 - +0.0 163,776 - +0.0 163,776 - -2.4 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 -1.7 163,827 + Rru_A0140 0.15 -1.0 163,827 + Rru_A0140 0.15 -2.2 163,828 - Rru_A0140 0.15 -3.0 163,828 - Rru_A0140 0.15 -2.2 163,828 - Rru_A0140 0.15 +0.0 163,828 - Rru_A0140 0.15 -1.9 163,828 - Rru_A0140 0.15 +0.0 163,829 + Rru_A0140 0.16 -2.5 163,830 - Rru_A0140 0.16 +0.0 163,830 - Rru_A0140 0.16 +0.0 163,830 - Rru_A0140 0.16 +0.0 163,830 - Rru_A0140 0.16 -2.5 163,830 - Rru_A0140 0.16 -1.7 163,868 + Rru_A0140 0.21 +0.0 163,868 + Rru_A0140 0.21 +0.0 163,868 + Rru_A0140 0.21 +0.0 163,869 - Rru_A0140 0.21 +0.0 163,869 - Rru_A0140 0.21 -2.5 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 -1.6 163,964 + Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 -1.3 163,965 - Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 +0.0 163,967 - Rru_A0140 0.33 -3.1
Or see this region's nucleotide sequence