Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0118 and Rru_A0119 are separated by 83 nucleotides Rru_A0119 and Rru_A0120 are separated by 669 nucleotides Rru_A0120 and Rru_A0121 are separated by 7 nucleotides Rru_A0121 and Rru_A0122 are separated by 17 nucleotides
Rru_A0118: Rru_A0118 - type II secretion system protein E (NCBI), at 138,055 to 139,101
_A0118
Rru_A0119: Rru_A0119 - Protein of unknown function DUF1328 (NCBI), at 139,185 to 139,355
_A0119
Rru_A0120: Rru_A0120 - chemotaxis sensory transducer (NCBI), at 140,025 to 141,362
_A0120
Rru_A0121: Rru_A0121 - hypothetical protein (NCBI), at 141,370 to 142,092
_A0121
Rru_A0122: Rru_A0122 - hypothetical protein (NCBI), at 142,110 to 142,472
_A0122
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 139.118 kb on - strand at 139.146 kb on - strand at 139.146 kb on - strand at 139.148 kb on + strand at 139.148 kb on + strand at 139.148 kb on + strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.150 kb on + strand at 139.151 kb on - strand at 139.383 kb on + strand at 139.383 kb on + strand at 139.570 kb on - strand at 139.570 kb on - strand at 139.570 kb on - strand at 139.671 kb on + strand at 140.024 kb on + strand at 140.024 kb on + strand at 140.045 kb on - strand at 140.154 kb on - strand at 140.157 kb on + strand at 140.237 kb on + strand, within Rru_A0120 at 140.237 kb on + strand, within Rru_A0120 at 140.395 kb on - strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.490 kb on + strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.491 kb on - strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.492 kb on + strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.493 kb on - strand, within Rru_A0120 at 140.620 kb on + strand, within Rru_A0120 at 140.902 kb on + strand, within Rru_A0120 at 140.903 kb on - strand, within Rru_A0120 at 141.260 kb on + strand at 141.260 kb on + strand at 141.260 kb on + strand at 141.261 kb on - strand at 141.287 kb on - strand at 141.287 kb on - strand at 141.507 kb on + strand, within Rru_A0121 at 141.508 kb on - strand, within Rru_A0121 at 141.508 kb on - strand, within Rru_A0121 at 141.741 kb on - strand, within Rru_A0121 at 141.741 kb on - strand, within Rru_A0121 at 141.745 kb on + strand, within Rru_A0121 at 141.746 kb on - strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 141.771 kb on + strand, within Rru_A0121 at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.145 kb on + strand at 142.146 kb on - strand at 142.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 139,118 - +0.0 139,146 - +0.0 139,146 - +0.0 139,148 + +0.0 139,148 + -1.9 139,148 + -0.9 139,149 - +0.0 139,149 - -2.1 139,149 - +0.0 139,149 - -2.1 139,149 - +0.0 139,150 + +0.0 139,151 - -2.6 139,383 + +0.0 139,383 + +0.0 139,570 - -1.8 139,570 - -2.6 139,570 - +0.0 139,671 + -2.3 140,024 + +0.0 140,024 + +0.0 140,045 - -1.6 140,154 - +0.0 140,157 + +0.0 140,237 + Rru_A0120 0.16 -2.7 140,237 + Rru_A0120 0.16 +0.0 140,395 - Rru_A0120 0.28 -2.0 140,490 + Rru_A0120 0.35 +0.0 140,490 + Rru_A0120 0.35 +0.0 140,490 + Rru_A0120 0.35 +0.0 140,491 - Rru_A0120 0.35 +0.0 140,491 - Rru_A0120 0.35 +0.0 140,491 - Rru_A0120 0.35 -1.0 140,492 + Rru_A0120 0.35 +0.0 140,492 + Rru_A0120 0.35 +0.0 140,492 + Rru_A0120 0.35 -1.0 140,493 - Rru_A0120 0.35 -0.7 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 -1.9 140,493 - Rru_A0120 0.35 +0.0 140,493 - Rru_A0120 0.35 -2.1 140,620 + Rru_A0120 0.44 +0.0 140,902 + Rru_A0120 0.66 +0.0 140,903 - Rru_A0120 0.66 -1.3 141,260 + +0.0 141,260 + +0.0 141,260 + +0.0 141,261 - +0.0 141,287 - -0.6 141,287 - +0.0 141,507 + Rru_A0121 0.19 +0.0 141,508 - Rru_A0121 0.19 +0.0 141,508 - Rru_A0121 0.19 +0.0 141,741 - Rru_A0121 0.51 +0.0 141,741 - Rru_A0121 0.51 +0.0 141,745 + Rru_A0121 0.52 +0.0 141,746 - Rru_A0121 0.52 +0.0 141,771 + Rru_A0121 0.55 -2.2 141,771 + Rru_A0121 0.55 +0.0 141,771 + Rru_A0121 0.55 +0.0 142,145 + +0.0 142,145 + +0.0 142,145 + -1.4 142,145 + -2.9 142,145 + -1.0 142,146 - +0.0 142,146 - -2.2
Or see this region's nucleotide sequence