Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0087 and Rru_A0088 are separated by 178 nucleotides Rru_A0088 and Rru_A0089 are separated by 120 nucleotides
Rru_A0087: Rru_A0087 - HI0933-like protein (NCBI), at 100,089 to 101,330
_A0087
Rru_A0088: Rru_A0088 - Zinc-containing alcohol dehydrogenase superfamily (NCBI), at 101,509 to 102,531
_A0088
Rru_A0089: Rru_A0089 - ATP-dependent DNA helicase RecQ (NCBI), at 102,652 to 104,541
_A0089
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.833 kb on + strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 100.834 kb on - strand, within Rru_A0087 at 101.241 kb on + strand at 101.242 kb on - strand at 101.375 kb on - strand at 101.405 kb on - strand at 101.647 kb on - strand, within Rru_A0088 at 101.647 kb on - strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.770 kb on + strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 101.771 kb on - strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.291 kb on + strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.292 kb on - strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.328 kb on + strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.329 kb on - strand, within Rru_A0088 at 102.529 kb on + strand at 102.529 kb on + strand at 102.599 kb on + strand at 102.600 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 102.763 kb on - strand at 103.063 kb on + strand, within Rru_A0089 at 103.063 kb on + strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.064 kb on - strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.189 kb on + strand, within Rru_A0089 at 103.190 kb on - strand, within Rru_A0089 at 103.279 kb on - strand, within Rru_A0089 at 103.407 kb on + strand, within Rru_A0089 at 103.429 kb on + strand, within Rru_A0089 at 103.430 kb on - strand, within Rru_A0089
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 100,833 + Rru_A0087 0.60 +0.0 100,833 + Rru_A0087 0.60 +0.0 100,833 + Rru_A0087 0.60 -4.0 100,833 + Rru_A0087 0.60 -1.9 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 -1.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 +0.0 100,834 - Rru_A0087 0.60 -2.1 101,241 + -2.8 101,242 - -2.0 101,375 - +0.0 101,405 - +0.0 101,647 - Rru_A0088 0.13 +0.0 101,647 - Rru_A0088 0.13 +0.0 101,770 + Rru_A0088 0.26 +0.0 101,770 + Rru_A0088 0.26 +0.0 101,771 - Rru_A0088 0.26 +0.0 101,771 - Rru_A0088 0.26 -1.2 102,291 + Rru_A0088 0.76 +0.0 102,291 + Rru_A0088 0.76 -1.0 102,292 - Rru_A0088 0.77 +0.0 102,292 - Rru_A0088 0.77 -2.2 102,328 + Rru_A0088 0.80 -2.5 102,328 + Rru_A0088 0.80 -2.2 102,328 + Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,329 - Rru_A0088 0.80 +0.0 102,529 + -2.8 102,529 + -2.6 102,599 + +0.0 102,600 - +0.0 102,763 - +1.0 102,763 - +0.0 102,763 - -2.1 103,063 + Rru_A0089 0.22 +0.0 103,063 + Rru_A0089 0.22 +0.0 103,064 - Rru_A0089 0.22 +0.0 103,064 - Rru_A0089 0.22 +0.0 103,189 + Rru_A0089 0.28 -1.9 103,189 + Rru_A0089 0.28 -1.0 103,189 + Rru_A0089 0.28 +0.0 103,189 + Rru_A0089 0.28 +0.0 103,189 + Rru_A0089 0.28 +0.0 103,190 - Rru_A0089 0.28 +0.0 103,279 - Rru_A0089 0.33 +0.0 103,407 + Rru_A0089 0.40 +0.0 103,429 + Rru_A0089 0.41 +0.0 103,430 - Rru_A0089 0.41 +0.0
Or see this region's nucleotide sequence