Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0072 and Rru_A0073 are separated by 412 nucleotides Rru_A0073 and Rru_A0074 are separated by 116 nucleotides
Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884
_A0072
Rru_A0073: Rru_A0073 - ribosomal subunit interface protein, putative (NCBI), at 85,297 to 85,677
_A0073
Rru_A0074: Rru_A0074 - Helicase-like (NCBI), at 85,794 to 88,994
_A0074
Position (kb) 85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 85.072 kb on + strand at 85.079 kb on - strand at 85.151 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.271 kb on + strand at 85.272 kb on - strand at 85.272 kb on - strand at 85.403 kb on + strand, within Rru_A0073 at 85.404 kb on - strand, within Rru_A0073 at 85.438 kb on - strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.458 kb on + strand, within Rru_A0073 at 85.459 kb on - strand, within Rru_A0073 at 85.621 kb on - strand, within Rru_A0073 at 85.675 kb on + strand at 85.675 kb on + strand at 85.759 kb on + strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.023 kb on - strand at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.259 kb on + strand, within Rru_A0074 at 86.331 kb on + strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.332 kb on - strand, within Rru_A0074 at 86.427 kb on + strand, within Rru_A0074 at 86.428 kb on - strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.448 kb on + strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.449 kb on - strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.597 kb on + strand, within Rru_A0074 at 86.598 kb on - strand, within Rru_A0074 at 86.652 kb on - strand, within Rru_A0074
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 85,072 + -2.3 85,079 - -1.8 85,151 + +0.0 85,271 + +0.0 85,271 + +0.0 85,271 + +0.0 85,272 - +0.0 85,272 - +0.0 85,403 + Rru_A0073 0.28 +0.0 85,404 - Rru_A0073 0.28 +0.0 85,438 - Rru_A0073 0.37 +0.0 85,458 + Rru_A0073 0.42 -3.2 85,458 + Rru_A0073 0.42 +0.0 85,459 - Rru_A0073 0.43 +0.0 85,621 - Rru_A0073 0.85 -2.6 85,675 + +0.0 85,675 + -3.3 85,759 + +0.0 86,023 - +0.0 86,023 - +0.0 86,023 - +0.0 86,259 + Rru_A0074 0.15 +0.0 86,259 + Rru_A0074 0.15 +0.0 86,259 + Rru_A0074 0.15 +0.0 86,259 + Rru_A0074 0.15 +0.0 86,259 + Rru_A0074 0.15 -2.0 86,331 + Rru_A0074 0.17 +0.0 86,332 - Rru_A0074 0.17 +0.0 86,332 - Rru_A0074 0.17 +0.0 86,332 - Rru_A0074 0.17 +0.0 86,427 + Rru_A0074 0.20 -1.6 86,428 - Rru_A0074 0.20 -1.0 86,448 + Rru_A0074 0.20 +0.0 86,448 + Rru_A0074 0.20 +0.0 86,449 - Rru_A0074 0.20 -3.1 86,449 - Rru_A0074 0.20 +0.0 86,597 + Rru_A0074 0.25 +0.0 86,597 + Rru_A0074 0.25 -1.0 86,598 - Rru_A0074 0.25 -2.9 86,652 - Rru_A0074 0.27 -1.9
Or see this region's nucleotide sequence