Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0040

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0039 and Rru_B0040 are separated by 6 nucleotidesRru_B0040 and Rru_B0041 are separated by 147 nucleotidesRru_B0041 and Rru_B0042 are separated by 34 nucleotides Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766 _B0039 Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251 _B0040 Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710 _B0041 Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599 _B0042 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 39.813 kb on + strand, within Rru_B0039at 39.813 kb on + strand, within Rru_B0039at 39.813 kb on + strand, within Rru_B0039at 39.813 kb on + strand, within Rru_B0039at 39.813 kb on + strand, within Rru_B0039at 39.814 kb on - strand, within Rru_B0039at 39.814 kb on - strand, within Rru_B0039at 39.814 kb on - strand, within Rru_B0039at 39.814 kb on - strand, within Rru_B0039at 39.942 kb on + strand, within Rru_B0039at 39.942 kb on + strand, within Rru_B0039at 39.943 kb on - strand, within Rru_B0039at 39.943 kb on - strand, within Rru_B0039at 40.257 kb on + strand, within Rru_B0039at 40.257 kb on + strand, within Rru_B0039at 40.258 kb on - strand, within Rru_B0039at 40.258 kb on - strand, within Rru_B0039at 40.258 kb on - strand, within Rru_B0039at 40.258 kb on - strand, within Rru_B0039at 40.258 kb on - strand, within Rru_B0039at 40.399 kb on - strand, within Rru_B0039at 40.399 kb on - strand, within Rru_B0039at 40.399 kb on - strand, within Rru_B0039at 40.476 kb on + strand, within Rru_B0039at 40.476 kb on + strand, within Rru_B0039at 40.476 kb on + strand, within Rru_B0039at 40.476 kb on + strand, within Rru_B0039at 40.477 kb on - strand, within Rru_B0039at 40.477 kb on - strand, within Rru_B0039at 40.477 kb on - strand, within Rru_B0039at 40.477 kb on - strand, within Rru_B0039at 40.477 kb on - strand, within Rru_B0039at 40.478 kb on + strand, within Rru_B0039at 40.478 kb on + strand, within Rru_B0039at 40.478 kb on + strand, within Rru_B0039at 40.479 kb on - strand, within Rru_B0039at 40.479 kb on - strand, within Rru_B0039at 40.604 kb on + strandat 40.605 kb on - strandat 40.605 kb on - strandat 40.605 kb on - strandat 40.605 kb on - strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.764 kb on + strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.765 kb on - strandat 40.784 kb on + strandat 40.784 kb on + strandat 40.784 kb on + strandat 40.785 kb on - strandat 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.253 kb on + strand, within Rru_B0040at 41.254 kb on - strand, within Rru_B0040at 41.254 kb on - strand, within Rru_B0040at 41.254 kb on - strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.556 kb on + strand, within Rru_B0040at 41.556 kb on + strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.558 kb on + strand, within Rru_B0040at 41.559 kb on - strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.628 kb on - strand, within Rru_B0040at 41.628 kb on - strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 42.069 kb on - strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.199 kb on - strandat 42.199 kb on - strandat 42.199 kb on - strandat 42.249 kb on + strandat 42.249 kb on + strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.309 kb on + strandat 42.310 kb on - strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.319 kb on - strandat 42.319 kb on - strandat 42.319 kb on - strandat 42.321 kb on + strandat 42.321 kb on + strandat 42.321 kb on + strandat 42.322 kb on - strandat 42.322 kb on - strandat 42.326 kb on + strandat 42.326 kb on + strandat 42.327 kb on - strandat 42.327 kb on - strandat 42.369 kb on + strandat 42.402 kb on + strandat 42.402 kb on + strandat 42.403 kb on - strandat 42.403 kb on - strandat 42.534 kb on + strand, within Rru_B0041at 42.537 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.658 kb on - strand, within Rru_B0041at 42.672 kb on + strand, within Rru_B0041at 42.672 kb on + strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.708 kb on + strandat 42.709 kb on - strandat 42.709 kb on - strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.838 kb on + strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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39,813 + Rru_B0039 0.46 -3.6
39,813 + Rru_B0039 0.46 -1.1
39,813 + Rru_B0039 0.46 -1.1
39,813 + Rru_B0039 0.46 -1.1
39,813 + Rru_B0039 0.46 -1.1
39,814 - Rru_B0039 0.46 -1.1
39,814 - Rru_B0039 0.46 -1.1
39,814 - Rru_B0039 0.46 -1.1
39,814 - Rru_B0039 0.46 -1.1
39,942 + Rru_B0039 0.53 -1.1
39,942 + Rru_B0039 0.53 -3.7
39,943 - Rru_B0039 0.53 -1.1
39,943 - Rru_B0039 0.53 -3.4
40,257 + Rru_B0039 0.71 -5.2
40,257 + Rru_B0039 0.71 -1.1
40,258 - Rru_B0039 0.71 -1.1
40,258 - Rru_B0039 0.71 -1.1
40,258 - Rru_B0039 0.71 -1.1
40,258 - Rru_B0039 0.71 -1.1
40,258 - Rru_B0039 0.71 -1.1
40,399 - Rru_B0039 0.79 -1.1
40,399 - Rru_B0039 0.79 -1.1
40,399 - Rru_B0039 0.79 -1.1
40,476 + Rru_B0039 0.83 -3.5
40,476 + Rru_B0039 0.83 -2.1
40,476 + Rru_B0039 0.83 -1.1
40,476 + Rru_B0039 0.83 -1.1
40,477 - Rru_B0039 0.84 -3.5
40,477 - Rru_B0039 0.84 -1.1
40,477 - Rru_B0039 0.84 -4.0
40,477 - Rru_B0039 0.84 -1.1
40,477 - Rru_B0039 0.84 -1.1
40,478 + Rru_B0039 0.84 -3.1
40,478 + Rru_B0039 0.84 -1.1
40,478 + Rru_B0039 0.84 -1.1
40,479 - Rru_B0039 0.84 -3.6
40,479 - Rru_B0039 0.84 -1.1
40,604 + -3.7
40,605 - -1.1
40,605 - -3.7
40,605 - -1.1
40,605 - -2.1
40,764 + -2.6
40,764 + -1.1
40,764 + -2.4
40,764 + -1.1
40,764 + -1.1
40,764 + -2.7
40,764 + -1.9
40,765 - -1.1
40,765 - -1.1
40,765 - -1.1
40,765 - -3.7
40,765 - -1.1
40,765 - -4.3
40,765 - -4.2
40,765 - -1.1
40,765 - -1.1
40,784 + -3.3
40,784 + -1.1
40,784 + -3.1
40,785 - -1.1
41,253 + Rru_B0040 0.32 -2.1
41,253 + Rru_B0040 0.32 -4.3
41,253 + Rru_B0040 0.32 -1.1
41,253 + Rru_B0040 0.32 -1.1
41,253 + Rru_B0040 0.32 -1.1
41,253 + Rru_B0040 0.32 -1.1
41,253 + Rru_B0040 0.32 -1.1
41,253 + Rru_B0040 0.32 -4.0
41,254 - Rru_B0040 0.33 -1.1
41,254 - Rru_B0040 0.33 -3.5
41,254 - Rru_B0040 0.33 -4.0
41,399 + Rru_B0040 0.42 -1.1
41,399 + Rru_B0040 0.42 -1.1
41,399 + Rru_B0040 0.42 -3.4
41,399 + Rru_B0040 0.42 -1.1
41,399 + Rru_B0040 0.42 -3.8
41,399 + Rru_B0040 0.42 -1.1
41,399 + Rru_B0040 0.42 -5.1
41,400 - Rru_B0040 0.42 -1.1
41,400 - Rru_B0040 0.42 -1.1
41,400 - Rru_B0040 0.42 -1.1
41,556 + Rru_B0040 0.53 -1.1
41,556 + Rru_B0040 0.53 -4.4
41,557 - Rru_B0040 0.53 -4.2
41,557 - Rru_B0040 0.53 -1.1
41,557 - Rru_B0040 0.53 -1.1
41,557 - Rru_B0040 0.53 -1.1
41,557 - Rru_B0040 0.53 -1.1
41,557 - Rru_B0040 0.53 -4.2
41,557 - Rru_B0040 0.53 -3.6
41,558 + Rru_B0040 0.53 -1.1
41,559 - Rru_B0040 0.53 -1.1
41,627 + Rru_B0040 0.58 -1.1
41,627 + Rru_B0040 0.58 -1.1
41,627 + Rru_B0040 0.58 -3.7
41,627 + Rru_B0040 0.58 -2.1
41,627 + Rru_B0040 0.58 -3.5
41,628 - Rru_B0040 0.58 -1.1
41,628 - Rru_B0040 0.58 -1.1
41,846 + Rru_B0040 0.73 -3.7
41,846 + Rru_B0040 0.73 -3.9
41,846 + Rru_B0040 0.73 -1.1
42,069 - Rru_B0040 0.88 -2.1
42,078 + Rru_B0040 0.88 -1.1
42,078 + Rru_B0040 0.88 -1.1
42,078 + Rru_B0040 0.88 -5.5
42,078 + Rru_B0040 0.88 -1.1
42,078 + Rru_B0040 0.88 -3.7
42,079 - Rru_B0040 0.88 -1.1
42,079 - Rru_B0040 0.88 -1.1
42,079 - Rru_B0040 0.88 -3.9
42,079 - Rru_B0040 0.88 -1.1
42,081 + Rru_B0040 0.88 -3.7
42,081 + Rru_B0040 0.88 -1.1
42,081 + Rru_B0040 0.88 -1.1
42,081 + Rru_B0040 0.88 -1.1
42,081 + Rru_B0040 0.88 -3.6
42,081 + Rru_B0040 0.88 -1.1
42,081 + Rru_B0040 0.88 -1.1
42,082 - Rru_B0040 0.89 -4.2
42,082 - Rru_B0040 0.89 -1.1
42,082 - Rru_B0040 0.89 -4.0
42,082 - Rru_B0040 0.89 -3.5
42,082 - Rru_B0040 0.89 -1.1
42,082 - Rru_B0040 0.89 -3.1
42,199 - -4.0
42,199 - -3.8
42,199 - -1.1
42,249 + -1.1
42,249 + -1.1
42,250 - -1.1
42,250 - -1.1
42,250 - -1.6
42,250 - -1.1
42,309 + -2.4
42,310 - -1.1
42,318 + -1.1
42,318 + -1.1
42,318 + -2.1
42,318 + -1.1
42,319 - -2.5
42,319 - -1.1
42,319 - -2.1
42,321 + -2.7
42,321 + -1.1
42,321 + -1.1
42,322 - -0.6
42,322 - -1.1
42,326 + -1.1
42,326 + -1.1
42,327 - -1.1
42,327 - -1.1
42,369 + -3.4
42,402 + -2.1
42,402 + -1.1
42,403 - -1.1
42,403 - -2.1
42,534 + Rru_B0041 0.43 -2.7
42,537 + Rru_B0041 0.44 -2.4
42,657 + Rru_B0041 0.83 -1.1
42,657 + Rru_B0041 0.83 -1.1
42,657 + Rru_B0041 0.83 -1.1
42,658 - Rru_B0041 0.83 -2.1
42,672 + Rru_B0041 0.88 -2.1
42,672 + Rru_B0041 0.88 -1.1
42,673 - Rru_B0041 0.88 -1.1
42,673 - Rru_B0041 0.88 -1.1
42,673 - Rru_B0041 0.88 -1.8
42,673 - Rru_B0041 0.88 -1.7
42,708 + -2.1
42,709 - -1.1
42,709 - -1.1
42,727 + -1.1
42,727 + -1.1
42,727 + -1.1
42,727 + -1.1
42,727 + -1.1
42,727 + -1.1
42,728 - -2.4
42,728 - -2.1
42,728 - -1.1
42,728 - -1.1
42,728 - -1.1
42,728 - -1.1
42,728 - -1.1
42,728 - -1.1
42,728 - -1.7
42,728 - -2.1
42,728 - -3.2
42,728 - -1.1
42,728 - -1.1
42,838 + Rru_B0042 0.11 -1.1
42,839 - Rru_B0042 0.11 -3.2
42,839 - Rru_B0042 0.11 -1.1
42,839 - Rru_B0042 0.11 -1.1
42,928 + Rru_B0042 0.21 -1.1
42,928 + Rru_B0042 0.21 -1.1
42,928 + Rru_B0042 0.21 -2.7
42,928 + Rru_B0042 0.21 -1.1
42,928 + Rru_B0042 0.21 -1.1
42,928 + Rru_B0042 0.21 -1.1
42,929 - Rru_B0042 0.22 -1.1
42,929 - Rru_B0042 0.22 -1.1
42,929 - Rru_B0042 0.22 -1.8
42,929 - Rru_B0042 0.22 -2.7

Or see this region's nucleotide sequence