Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0026 and Rru_B0027 are separated by 283 nucleotides Rru_B0027 and Rru_B0028 overlap by 11 nucleotides Rru_B0028 and Rru_B0029 are separated by 13 nucleotides
Rru_B0026: Rru_B0026 - SapC (NCBI), at 24,461 to 25,255
_B0026
Rru_B0027: Rru_B0027 - ABC-2 (NCBI), at 25,539 to 26,258
_B0027
Rru_B0028: Rru_B0028 - ABC transporter related (NCBI), at 26,248 to 27,666
_B0028
Rru_B0029: Rru_B0029 - Plasmid encoded RepA protein (NCBI), at 27,680 to 28,666
_B0029
Position (kb) 26
27
28 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 25.298 kb on + strand at 25.298 kb on + strand at 25.369 kb on + strand at 25.369 kb on + strand at 25.397 kb on + strand at 25.413 kb on + strand at 26.176 kb on - strand, within Rru_B0027 at 26.310 kb on + strand at 26.595 kb on + strand, within Rru_B0028 at 26.595 kb on + strand, within Rru_B0028 at 26.975 kb on - strand, within Rru_B0028 at 27.461 kb on - strand, within Rru_B0028 at 27.677 kb on + strand at 27.677 kb on + strand at 27.677 kb on + strand at 27.678 kb on - strand at 27.718 kb on + strand at 27.718 kb on + strand at 27.718 kb on + strand at 27.718 kb on + strand at 27.719 kb on - strand at 27.719 kb on - strand at 27.719 kb on - strand at 27.776 kb on - strand at 27.857 kb on + strand, within Rru_B0029 at 27.858 kb on - strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.987 kb on + strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.988 kb on - strand, within Rru_B0029 at 27.991 kb on + strand, within Rru_B0029 at 27.991 kb on + strand, within Rru_B0029 at 27.991 kb on + strand, within Rru_B0029 at 27.991 kb on + strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 27.992 kb on - strand, within Rru_B0029 at 28.106 kb on + strand, within Rru_B0029 at 28.168 kb on + strand, within Rru_B0029 at 28.260 kb on + strand, within Rru_B0029 at 28.260 kb on + strand, within Rru_B0029 at 28.260 kb on + strand, within Rru_B0029 at 28.365 kb on + strand, within Rru_B0029 at 28.366 kb on - strand, within Rru_B0029 at 28.366 kb on - strand, within Rru_B0029 at 28.395 kb on + strand, within Rru_B0029 at 28.395 kb on + strand, within Rru_B0029 at 28.531 kb on + strand, within Rru_B0029
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 25,298 + -1.2 25,298 + -1.1 25,369 + -1.1 25,369 + -1.1 25,397 + -1.4 25,413 + -1.1 26,176 - Rru_B0027 0.88 -1.1 26,310 + -1.1 26,595 + Rru_B0028 0.24 -1.1 26,595 + Rru_B0028 0.24 -1.1 26,975 - Rru_B0028 0.51 -3.5 27,461 - Rru_B0028 0.85 -1.1 27,677 + +0.7 27,677 + -2.1 27,677 + +2.3 27,678 - -2.7 27,718 + -1.1 27,718 + -1.1 27,718 + -1.1 27,718 + -1.1 27,719 - -3.4 27,719 - -1.1 27,719 - -1.1 27,776 - -1.1 27,857 + Rru_B0029 0.18 -1.1 27,858 - Rru_B0029 0.18 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.0 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -2.7 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -1.1 27,987 + Rru_B0029 0.31 -2.4 27,987 + Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -3.8 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -2.1 27,988 - Rru_B0029 0.31 -2.9 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -2.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -2.4 27,988 - Rru_B0029 0.31 -2.1 27,988 - Rru_B0029 0.31 -2.9 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -3.2 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,988 - Rru_B0029 0.31 -1.1 27,991 + Rru_B0029 0.32 -1.1 27,991 + Rru_B0029 0.32 -1.1 27,991 + Rru_B0029 0.32 -2.1 27,991 + Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -2.4 27,992 - Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -1.1 27,992 - Rru_B0029 0.32 -2.0 28,106 + Rru_B0029 0.43 -2.2 28,168 + Rru_B0029 0.49 -2.3 28,260 + Rru_B0029 0.59 -1.1 28,260 + Rru_B0029 0.59 -1.8 28,260 + Rru_B0029 0.59 -1.1 28,365 + Rru_B0029 0.69 -1.1 28,366 - Rru_B0029 0.70 -1.1 28,366 - Rru_B0029 0.70 -1.1 28,395 + Rru_B0029 0.72 -1.1 28,395 + Rru_B0029 0.72 -1.1 28,531 + Rru_B0029 0.86 -1.1
Or see this region's nucleotide sequence