Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0022

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0020 and Rru_B0021 are separated by 612 nucleotidesRru_B0021 and Rru_B0022 are separated by 43 nucleotidesRru_B0022 and Rru_B0023 are separated by 182 nucleotides Rru_B0020: Rru_B0020 - Major facilitator superfamily MFS_1 (NCBI), at 18,918 to 20,465 _B0020 Rru_B0021: Rru_B0021 - Transcriptional Regulator, Fis family (NCBI), at 21,078 to 21,272 _B0021 Rru_B0022: Rru_B0022 - Resolvase-like (NCBI), at 21,316 to 21,717 _B0022 Rru_B0023: Rru_B0023 - hypothetical protein (NCBI), at 21,900 to 22,385 _B0023 Position (kb) 21 22Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 20.335 kb on + strandat 20.336 kb on - strandat 20.336 kb on - strandat 20.344 kb on + strandat 20.344 kb on + strandat 20.345 kb on - strandat 20.345 kb on - strandat 20.345 kb on - strandat 20.466 kb on + strandat 20.466 kb on + strandat 20.467 kb on - strandat 20.522 kb on + strandat 20.522 kb on + strandat 20.553 kb on + strandat 20.553 kb on + strandat 20.553 kb on + strandat 20.554 kb on - strandat 20.554 kb on - strandat 20.554 kb on - strandat 20.554 kb on - strandat 20.582 kb on + strandat 20.583 kb on - strandat 20.583 kb on - strandat 20.583 kb on - strandat 20.638 kb on + strandat 20.638 kb on + strandat 20.642 kb on + strandat 20.643 kb on - strandat 20.643 kb on - strandat 20.741 kb on + strandat 20.860 kb on + strandat 20.861 kb on - strandat 20.916 kb on + strandat 20.916 kb on + strandat 20.917 kb on - strandat 20.955 kb on + strandat 20.955 kb on + strandat 20.956 kb on - strandat 20.976 kb on + strandat 20.990 kb on + strandat 20.991 kb on - strandat 21.051 kb on - strandat 21.149 kb on - strand, within Rru_B0021at 21.488 kb on - strand, within Rru_B0022at 21.614 kb on + strand, within Rru_B0022at 21.614 kb on + strand, within Rru_B0022at 21.704 kb on + strandat 21.704 kb on + strandat 21.704 kb on + strandat 21.704 kb on + strandat 21.704 kb on + strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.705 kb on - strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.811 kb on + strandat 21.812 kb on - strandat 21.812 kb on - strandat 21.812 kb on - strandat 21.812 kb on - strandat 21.812 kb on - strandat 21.812 kb on - strandat 21.841 kb on - strandat 21.841 kb on - strandat 21.841 kb on - strandat 22.060 kb on - strand, within Rru_B0023at 22.060 kb on - strand, within Rru_B0023at 22.074 kb on + strand, within Rru_B0023at 22.074 kb on + strand, within Rru_B0023at 22.075 kb on - strand, within Rru_B0023at 22.075 kb on - strand, within Rru_B0023at 22.075 kb on - strand, within Rru_B0023at 22.168 kb on - strand, within Rru_B0023at 22.168 kb on - strand, within Rru_B0023at 22.168 kb on - strand, within Rru_B0023at 22.183 kb on - strand, within Rru_B0023at 22.183 kb on - strand, within Rru_B0023at 22.369 kb on + strandat 22.369 kb on + strandat 22.369 kb on + strandat 22.370 kb on - strandat 22.370 kb on - strandat 22.370 kb on - strandat 22.370 kb on - strandat 22.370 kb on - strandat 22.370 kb on - strandat 22.388 kb on + strandat 22.388 kb on + strandat 22.389 kb on - strandat 22.389 kb on - strandat 22.389 kb on - strandat 22.543 kb on - strandat 22.580 kb on - strandat 22.675 kb on + strandat 22.680 kb on + strandat 22.681 kb on - strandat 22.681 kb on - strandat 22.701 kb on + strandat 22.701 kb on + strandat 22.701 kb on + strandat 22.702 kb on - strandat 22.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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20,335 + -1.7
20,336 - -1.1
20,336 - -1.1
20,344 + -1.1
20,344 + -1.7
20,345 - -2.7
20,345 - -2.0
20,345 - -1.1
20,466 + -2.1
20,466 + -1.1
20,467 - -1.1
20,522 + -1.1
20,522 + -1.6
20,553 + -1.1
20,553 + -1.0
20,553 + -0.2
20,554 - -1.1
20,554 - -1.1
20,554 - -2.1
20,554 - -1.1
20,582 + -1.1
20,583 - -1.1
20,583 - -1.9
20,583 - -1.1
20,638 + -1.1
20,638 + -1.3
20,642 + -1.1
20,643 - -1.1
20,643 - -2.1
20,741 + -2.1
20,860 + -3.6
20,861 - -1.1
20,916 + -1.1
20,916 + -1.1
20,917 - -1.1
20,955 + -1.1
20,955 + -1.1
20,956 - -1.1
20,976 + -1.1
20,990 + -1.1
20,991 - -1.1
21,051 - -2.0
21,149 - Rru_B0021 0.36 -1.1
21,488 - Rru_B0022 0.43 -4.1
21,614 + Rru_B0022 0.74 -1.1
21,614 + Rru_B0022 0.74 -1.1
21,704 + -1.5
21,704 + -0.4
21,704 + -1.7
21,704 + -1.1
21,704 + -3.1
21,705 - -1.1
21,705 - -2.1
21,705 - -1.1
21,705 - -1.1
21,705 - -1.1
21,705 - -1.0
21,705 - -1.1
21,705 - -1.1
21,811 + -1.1
21,811 + -1.1
21,811 + -1.1
21,811 + -1.1
21,811 + -1.8
21,811 + -2.7
21,811 + -1.3
21,812 - -1.1
21,812 - -1.1
21,812 - -1.4
21,812 - -1.1
21,812 - -1.1
21,812 - -0.7
21,841 - -1.1
21,841 - -1.1
21,841 - -2.1
22,060 - Rru_B0023 0.33 -1.1
22,060 - Rru_B0023 0.33 -1.1
22,074 + Rru_B0023 0.36 -2.1
22,074 + Rru_B0023 0.36 -1.9
22,075 - Rru_B0023 0.36 -1.3
22,075 - Rru_B0023 0.36 -1.1
22,075 - Rru_B0023 0.36 -1.1
22,168 - Rru_B0023 0.55 -1.1
22,168 - Rru_B0023 0.55 -1.1
22,168 - Rru_B0023 0.55 -1.1
22,183 - Rru_B0023 0.58 -1.1
22,183 - Rru_B0023 0.58 -1.1
22,369 + -1.1
22,369 + -1.5
22,369 + -1.1
22,370 - -1.1
22,370 - -2.1
22,370 - -1.1
22,370 - -2.1
22,370 - -1.1
22,370 - -1.1
22,388 + -1.3
22,388 + -1.1
22,389 - -1.7
22,389 - -1.1
22,389 - -0.8
22,543 - -2.1
22,580 - -1.1
22,675 + -1.1
22,680 + -1.1
22,681 - -1.1
22,681 - -1.1
22,701 + -1.1
22,701 + -1.1
22,701 + -2.0
22,702 - -2.1
22,717 + -1.1

Or see this region's nucleotide sequence