Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0017 and Rru_B0018 are separated by 87 nucleotides Rru_B0018 and Rru_B0019 are separated by 117 nucleotides Rru_B0019 and Rru_B0020 overlap by 1 nucleotides
Rru_B0017: Rru_B0017 - Transcriptional Regulator, LysR family (NCBI), at 16,441 to 17,346
_B0017
Rru_B0018: Rru_B0018 - Protein of unknown function DUF161 (NCBI), at 17,434 to 18,111
_B0018
Rru_B0019: Rru_B0019 - O-methyltransferase, family 3 (NCBI), at 18,229 to 18,918
_B0019
Rru_B0020: Rru_B0020 - Major facilitator superfamily MFS_1 (NCBI), at 18,918 to 20,465
_B0020
Position (kb) 17
18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 17.167 kb on + strand, within Rru_B0017 at 17.167 kb on + strand, within Rru_B0017 at 17.168 kb on - strand, within Rru_B0017 at 17.168 kb on - strand, within Rru_B0017 at 17.168 kb on - strand, within Rru_B0017 at 17.168 kb on - strand, within Rru_B0017 at 17.168 kb on - strand, within Rru_B0017 at 17.345 kb on - strand at 17.497 kb on + strand at 17.498 kb on - strand at 17.533 kb on + strand, within Rru_B0018 at 17.533 kb on + strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.534 kb on - strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.545 kb on + strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.546 kb on - strand, within Rru_B0018 at 17.603 kb on + strand, within Rru_B0018 at 17.603 kb on + strand, within Rru_B0018 at 17.603 kb on + strand, within Rru_B0018 at 17.604 kb on - strand, within Rru_B0018 at 17.604 kb on - strand, within Rru_B0018 at 17.614 kb on - strand, within Rru_B0018 at 17.733 kb on + strand, within Rru_B0018 at 17.734 kb on - strand, within Rru_B0018 at 17.734 kb on - strand, within Rru_B0018 at 17.734 kb on - strand, within Rru_B0018 at 17.734 kb on - strand, within Rru_B0018 at 17.734 kb on - strand, within Rru_B0018 at 17.815 kb on + strand, within Rru_B0018 at 17.816 kb on - strand, within Rru_B0018 at 17.816 kb on - strand, within Rru_B0018 at 17.816 kb on - strand, within Rru_B0018 at 18.153 kb on + strand at 18.154 kb on - strand at 18.160 kb on - strand at 18.556 kb on + strand, within Rru_B0019 at 18.556 kb on + strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.718 kb on + strand, within Rru_B0019 at 18.718 kb on + strand, within Rru_B0019 at 18.719 kb on - strand, within Rru_B0019 at 18.719 kb on - strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.854 kb on - strand at 18.877 kb on + strand at 18.878 kb on - strand at 18.878 kb on - strand at 18.878 kb on - strand at 19.074 kb on - strand, within Rru_B0020
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 17,167 + Rru_B0017 0.80 -1.1 17,167 + Rru_B0017 0.80 -1.7 17,168 - Rru_B0017 0.80 -1.1 17,168 - Rru_B0017 0.80 -1.1 17,168 - Rru_B0017 0.80 -1.1 17,168 - Rru_B0017 0.80 -1.1 17,168 - Rru_B0017 0.80 -1.1 17,345 - -1.1 17,497 + -1.1 17,498 - -2.1 17,533 + Rru_B0018 0.15 -1.1 17,533 + Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.5 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,534 - Rru_B0018 0.15 -1.1 17,545 + Rru_B0018 0.16 -1.1 17,545 + Rru_B0018 0.16 -1.1 17,545 + Rru_B0018 0.16 -1.1 17,545 + Rru_B0018 0.16 -1.1 17,545 + Rru_B0018 0.16 -1.1 17,545 + Rru_B0018 0.16 -2.1 17,546 - Rru_B0018 0.17 -1.1 17,546 - Rru_B0018 0.17 -1.1 17,546 - Rru_B0018 0.17 -1.1 17,546 - Rru_B0018 0.17 -1.8 17,546 - Rru_B0018 0.17 -1.1 17,546 - Rru_B0018 0.17 -1.1 17,546 - Rru_B0018 0.17 -1.1 17,603 + Rru_B0018 0.25 -1.1 17,603 + Rru_B0018 0.25 -1.9 17,603 + Rru_B0018 0.25 -1.5 17,604 - Rru_B0018 0.25 -1.9 17,604 - Rru_B0018 0.25 -1.1 17,614 - Rru_B0018 0.27 -1.1 17,733 + Rru_B0018 0.44 -1.1 17,734 - Rru_B0018 0.44 -0.6 17,734 - Rru_B0018 0.44 +0.5 17,734 - Rru_B0018 0.44 -1.1 17,734 - Rru_B0018 0.44 -1.1 17,734 - Rru_B0018 0.44 -1.1 17,815 + Rru_B0018 0.56 -1.1 17,816 - Rru_B0018 0.56 -1.1 17,816 - Rru_B0018 0.56 -2.8 17,816 - Rru_B0018 0.56 -1.1 18,153 + -1.1 18,154 - -2.1 18,160 - -1.1 18,556 + Rru_B0019 0.47 -1.1 18,556 + Rru_B0019 0.47 -1.2 18,557 - Rru_B0019 0.48 -1.1 18,557 - Rru_B0019 0.48 -4.2 18,557 - Rru_B0019 0.48 -1.1 18,694 + Rru_B0019 0.67 -1.1 18,694 + Rru_B0019 0.67 -1.1 18,694 + Rru_B0019 0.67 -1.1 18,694 + Rru_B0019 0.67 -1.1 18,694 + Rru_B0019 0.67 -1.4 18,695 - Rru_B0019 0.68 -2.1 18,695 - Rru_B0019 0.68 -2.4 18,695 - Rru_B0019 0.68 -1.1 18,718 + Rru_B0019 0.71 -2.1 18,718 + Rru_B0019 0.71 -1.1 18,719 - Rru_B0019 0.71 -1.6 18,719 - Rru_B0019 0.71 -1.4 18,820 + Rru_B0019 0.86 -1.1 18,820 + Rru_B0019 0.86 -1.1 18,820 + Rru_B0019 0.86 -2.4 18,820 + Rru_B0019 0.86 -1.1 18,820 + Rru_B0019 0.86 -1.1 18,821 - Rru_B0019 0.86 -1.4 18,821 - Rru_B0019 0.86 -1.1 18,821 - Rru_B0019 0.86 -1.1 18,821 - Rru_B0019 0.86 -1.1 18,821 - Rru_B0019 0.86 -1.1 18,830 - Rru_B0019 0.87 -2.7 18,830 - Rru_B0019 0.87 -1.6 18,830 - Rru_B0019 0.87 -1.1 18,854 - -1.1 18,877 + -1.1 18,878 - -2.0 18,878 - -1.1 18,878 - -2.1 19,074 - Rru_B0020 0.10 -1.1
Or see this region's nucleotide sequence