Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_486

Experiment: Nickel (II) chloride 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_485 and Pf6N2E2_486 overlap by 1 nucleotidesPf6N2E2_486 and Pf6N2E2_487 are separated by 75 nucleotides Pf6N2E2_485 - TRAP-type C4-dicarboxylate transport system, large permease component, at 551,539 to 552,819 _485 Pf6N2E2_486 - TRAP-type C4-dicarboxylate transport system, small permease component, at 552,819 to 553,346 _486 Pf6N2E2_487 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 553,422 to 554,390 _487 Position (kb) 552 553 554Strain fitness (log2 ratio) -2 -1 0 1at 551.879 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.948 kb on + strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 551.949 kb on - strand, within Pf6N2E2_485at 552.006 kb on + strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.007 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.042 kb on - strand, within Pf6N2E2_485at 552.050 kb on + strand, within Pf6N2E2_485at 552.224 kb on + strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.225 kb on - strand, within Pf6N2E2_485at 552.348 kb on - strand, within Pf6N2E2_485at 552.566 kb on - strand, within Pf6N2E2_485at 552.787 kb on + strandat 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.946 kb on + strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 552.947 kb on - strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.056 kb on + strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.057 kb on - strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.169 kb on + strand, within Pf6N2E2_486at 553.170 kb on - strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.173 kb on + strand, within Pf6N2E2_486at 553.174 kb on - strand, within Pf6N2E2_486at 553.309 kb on + strandat 553.309 kb on + strandat 553.325 kb on + strandat 553.325 kb on + strandat 553.326 kb on - strandat 553.359 kb on + strandat 553.359 kb on + strandat 553.424 kb on - strandat 553.440 kb on - strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.717 kb on + strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.718 kb on - strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.720 kb on + strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.721 kb on - strand, within Pf6N2E2_487at 553.735 kb on + strand, within Pf6N2E2_487at 554.193 kb on + strand, within Pf6N2E2_487at 554.194 kb on - strand, within Pf6N2E2_487at 554.210 kb on - strand, within Pf6N2E2_487

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M
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551,879 + Pf6N2E2_485 0.27 +0.9
551,948 + Pf6N2E2_485 0.32 -2.1
551,948 + Pf6N2E2_485 0.32 +0.4
551,949 - Pf6N2E2_485 0.32 +0.2
551,949 - Pf6N2E2_485 0.32 -0.8
552,006 + Pf6N2E2_485 0.36 +0.4
552,007 - Pf6N2E2_485 0.37 -1.4
552,007 - Pf6N2E2_485 0.37 -0.4
552,007 - Pf6N2E2_485 0.37 -0.1
552,042 - Pf6N2E2_485 0.39 +0.2
552,042 - Pf6N2E2_485 0.39 +1.1
552,050 + Pf6N2E2_485 0.40 -1.1
552,224 + Pf6N2E2_485 0.53 -1.2
552,225 - Pf6N2E2_485 0.54 -0.7
552,225 - Pf6N2E2_485 0.54 +0.7
552,225 - Pf6N2E2_485 0.54 -1.1
552,225 - Pf6N2E2_485 0.54 +0.7
552,225 - Pf6N2E2_485 0.54 -1.7
552,348 - Pf6N2E2_485 0.63 +0.0
552,566 - Pf6N2E2_485 0.80 +0.2
552,787 + -1.1
552,946 + Pf6N2E2_486 0.24 -0.2
552,946 + Pf6N2E2_486 0.24 +0.1
552,946 + Pf6N2E2_486 0.24 +0.2
552,946 + Pf6N2E2_486 0.24 +0.4
552,946 + Pf6N2E2_486 0.24 -0.2
552,946 + Pf6N2E2_486 0.24 -0.2
552,947 - Pf6N2E2_486 0.24 +0.5
552,947 - Pf6N2E2_486 0.24 -1.2
552,947 - Pf6N2E2_486 0.24 -0.3
552,947 - Pf6N2E2_486 0.24 +0.5
553,056 + Pf6N2E2_486 0.45 -0.6
553,056 + Pf6N2E2_486 0.45 +0.6
553,056 + Pf6N2E2_486 0.45 -1.2
553,057 - Pf6N2E2_486 0.45 -0.9
553,057 - Pf6N2E2_486 0.45 -1.9
553,057 - Pf6N2E2_486 0.45 -0.2
553,057 - Pf6N2E2_486 0.45 +0.6
553,169 + Pf6N2E2_486 0.66 -0.3
553,169 + Pf6N2E2_486 0.66 -2.4
553,170 - Pf6N2E2_486 0.66 +0.4
553,173 + Pf6N2E2_486 0.67 -0.9
553,173 + Pf6N2E2_486 0.67 -0.5
553,173 + Pf6N2E2_486 0.67 -0.7
553,174 - Pf6N2E2_486 0.67 +0.2
553,309 + -0.4
553,309 + -1.0
553,325 + -0.2
553,325 + +0.6
553,326 - +1.1
553,359 + -0.6
553,359 + -1.1
553,424 - +1.2
553,440 - -0.2
553,501 + +1.7
553,501 + -0.4
553,501 + -0.1
553,502 - +0.0
553,502 - +0.0
553,502 - -1.6
553,717 + Pf6N2E2_487 0.30 +0.7
553,717 + Pf6N2E2_487 0.30 +0.8
553,717 + Pf6N2E2_487 0.30 +0.9
553,717 + Pf6N2E2_487 0.30 +0.1
553,718 - Pf6N2E2_487 0.31 +0.5
553,718 - Pf6N2E2_487 0.31 -0.4
553,718 - Pf6N2E2_487 0.31 -1.9
553,720 + Pf6N2E2_487 0.31 +1.1
553,720 + Pf6N2E2_487 0.31 +1.1
553,720 + Pf6N2E2_487 0.31 -0.6
553,720 + Pf6N2E2_487 0.31 +0.7
553,720 + Pf6N2E2_487 0.31 +0.9
553,721 - Pf6N2E2_487 0.31 +0.5
553,721 - Pf6N2E2_487 0.31 +1.7
553,735 + Pf6N2E2_487 0.32 +0.3
554,193 + Pf6N2E2_487 0.80 -0.4
554,194 - Pf6N2E2_487 0.80 -1.1
554,210 - Pf6N2E2_487 0.81 +0.3

Or see this region's nucleotide sequence