Experiment: Nickel (II) chloride 0.0025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4628 and Pf6N2E2_4629 are separated by 313 nucleotides Pf6N2E2_4629 and Pf6N2E2_4630 are separated by 40 nucleotides Pf6N2E2_4630 and Pf6N2E2_4631 are separated by 206 nucleotides
Pf6N2E2_4628 - Malonate utilization transcriptional regulator, at 5,356,510 to 5,357,424
_4628
Pf6N2E2_4629 - COG1272: Predicted membrane protein hemolysin III homolog, at 5,357,738 to 5,358,355
_4629
Pf6N2E2_4630 - Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-), at 5,358,396 to 5,359,115
_4630
Pf6N2E2_4631 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 5,359,322 to 5,360,728
_4631
Position (kb)
5357
5358
5359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.006 kb on + strand, within Pf6N2E2_4628 at 5357.007 kb on - strand, within Pf6N2E2_4628 at 5357.111 kb on + strand, within Pf6N2E2_4628 at 5357.171 kb on - strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.222 kb on + strand, within Pf6N2E2_4628 at 5357.223 kb on - strand, within Pf6N2E2_4628 at 5357.223 kb on - strand, within Pf6N2E2_4628 at 5357.437 kb on + strand at 5357.438 kb on - strand at 5357.438 kb on - strand at 5357.474 kb on + strand at 5357.474 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.487 kb on + strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.488 kb on - strand at 5357.518 kb on + strand at 5357.518 kb on + strand at 5357.518 kb on + strand at 5357.519 kb on - strand at 5357.519 kb on - strand at 5357.519 kb on - strand at 5357.653 kb on - strand at 5357.653 kb on - strand at 5357.741 kb on + strand at 5357.741 kb on + strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.742 kb on - strand at 5357.797 kb on + strand at 5357.870 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.894 kb on + strand, within Pf6N2E2_4629 at 5357.972 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.993 kb on + strand, within Pf6N2E2_4629 at 5357.994 kb on - strand, within Pf6N2E2_4629 at 5357.994 kb on - strand, within Pf6N2E2_4629 at 5358.131 kb on + strand, within Pf6N2E2_4629 at 5358.131 kb on + strand, within Pf6N2E2_4629 at 5358.132 kb on - strand, within Pf6N2E2_4629 at 5358.230 kb on + strand, within Pf6N2E2_4629 at 5358.231 kb on - strand, within Pf6N2E2_4629 at 5358.231 kb on - strand, within Pf6N2E2_4629 at 5358.244 kb on + strand, within Pf6N2E2_4629 at 5358.344 kb on + strand at 5358.344 kb on + strand at 5358.344 kb on + strand at 5358.345 kb on - strand at 5358.353 kb on + strand at 5358.397 kb on + strand at 5359.039 kb on + strand, within Pf6N2E2_4630 at 5359.039 kb on + strand, within Pf6N2E2_4630 at 5359.040 kb on - strand, within Pf6N2E2_4630 at 5359.040 kb on - strand, within Pf6N2E2_4630 at 5359.040 kb on - strand, within Pf6N2E2_4630 at 5359.040 kb on - strand, within Pf6N2E2_4630 at 5359.144 kb on + strand at 5359.144 kb on + strand at 5359.144 kb on + strand at 5359.144 kb on + strand at 5359.144 kb on + strand at 5359.145 kb on - strand at 5359.145 kb on - strand at 5359.177 kb on + strand at 5359.178 kb on - strand at 5359.208 kb on + strand at 5359.208 kb on + strand at 5359.208 kb on + strand at 5359.208 kb on + strand at 5359.208 kb on + strand at 5359.209 kb on - strand at 5359.209 kb on - strand at 5359.209 kb on - strand at 5359.278 kb on + strand at 5359.278 kb on + strand at 5359.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M remove 5,357,006 + Pf6N2E2_4628 0.54 +0.3 5,357,006 + Pf6N2E2_4628 0.54 +0.8 5,357,006 + Pf6N2E2_4628 0.54 -1.6 5,357,007 - Pf6N2E2_4628 0.54 -0.9 5,357,111 + Pf6N2E2_4628 0.66 +0.2 5,357,171 - Pf6N2E2_4628 0.72 +0.3 5,357,222 + Pf6N2E2_4628 0.78 +0.1 5,357,222 + Pf6N2E2_4628 0.78 -0.5 5,357,222 + Pf6N2E2_4628 0.78 +0.9 5,357,222 + Pf6N2E2_4628 0.78 -0.7 5,357,222 + Pf6N2E2_4628 0.78 -0.7 5,357,223 - Pf6N2E2_4628 0.78 -0.1 5,357,223 - Pf6N2E2_4628 0.78 +0.1 5,357,437 + -0.3 5,357,438 - +1.0 5,357,438 - -0.6 5,357,474 + +0.1 5,357,474 + +0.5 5,357,487 + +0.1 5,357,487 + +0.2 5,357,487 + +0.1 5,357,487 + +0.7 5,357,487 + +0.2 5,357,488 - +0.8 5,357,488 - -0.6 5,357,488 - +0.8 5,357,488 - -0.0 5,357,518 + +1.0 5,357,518 + -0.2 5,357,518 + -0.7 5,357,519 - +0.3 5,357,519 - +0.9 5,357,519 - +0.3 5,357,653 - +0.5 5,357,653 - -0.6 5,357,741 + -0.5 5,357,741 + +0.1 5,357,742 - -0.5 5,357,742 - +1.7 5,357,742 - -0.0 5,357,742 - +0.4 5,357,797 + -1.0 5,357,870 + Pf6N2E2_4629 0.21 -1.9 5,357,894 + Pf6N2E2_4629 0.25 -0.4 5,357,894 + Pf6N2E2_4629 0.25 -1.4 5,357,894 + Pf6N2E2_4629 0.25 +0.8 5,357,894 + Pf6N2E2_4629 0.25 -0.6 5,357,972 + Pf6N2E2_4629 0.38 +0.1 5,357,993 + Pf6N2E2_4629 0.41 -0.3 5,357,993 + Pf6N2E2_4629 0.41 +0.9 5,357,993 + Pf6N2E2_4629 0.41 -1.6 5,357,994 - Pf6N2E2_4629 0.41 -0.1 5,357,994 - Pf6N2E2_4629 0.41 -1.7 5,358,131 + Pf6N2E2_4629 0.64 -0.8 5,358,131 + Pf6N2E2_4629 0.64 -0.8 5,358,132 - Pf6N2E2_4629 0.64 -0.6 5,358,230 + Pf6N2E2_4629 0.80 +0.2 5,358,231 - Pf6N2E2_4629 0.80 -0.8 5,358,231 - Pf6N2E2_4629 0.80 -1.1 5,358,244 + Pf6N2E2_4629 0.82 -2.2 5,358,344 + +0.7 5,358,344 + -1.4 5,358,344 + +0.9 5,358,345 - -1.1 5,358,353 + -1.2 5,358,397 + +1.0 5,359,039 + Pf6N2E2_4630 0.89 +1.3 5,359,039 + Pf6N2E2_4630 0.89 +0.9 5,359,040 - Pf6N2E2_4630 0.89 +0.3 5,359,040 - Pf6N2E2_4630 0.89 +1.0 5,359,040 - Pf6N2E2_4630 0.89 +1.1 5,359,040 - Pf6N2E2_4630 0.89 +0.3 5,359,144 + +0.1 5,359,144 + +0.3 5,359,144 + -0.0 5,359,144 + -0.6 5,359,144 + +0.2 5,359,145 - +0.6 5,359,145 - -0.3 5,359,177 + +0.2 5,359,178 - +0.9 5,359,208 + +1.2 5,359,208 + +0.5 5,359,208 + -0.7 5,359,208 + -0.6 5,359,208 + +2.0 5,359,209 - -1.6 5,359,209 - +0.4 5,359,209 - -1.6 5,359,278 + +0.8 5,359,278 + -0.2 5,359,279 - -0.1
Or see this region's nucleotide sequence