Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3908

Experiment: Nickel (II) chloride 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3906 and Pf6N2E2_3907 overlap by 1 nucleotidesPf6N2E2_3907 and Pf6N2E2_3908 are separated by 255 nucleotidesPf6N2E2_3908 and Pf6N2E2_3909 are separated by 250 nucleotides Pf6N2E2_3906 - Transcription accessory protein (S1 RNA-binding domain), at 4,539,819 to 4,542,143 _3906 Pf6N2E2_3907 - Uncharacterized protein, possibly involved in aromatic compounds catabolism, at 4,542,143 to 4,542,526 _3907 Pf6N2E2_3908 - Glutamate--cysteine ligase (EC 6.3.2.2), at 4,542,782 to 4,544,380 _3908 Pf6N2E2_3909 - Taurine-binding periplasmic protein TauA, at 4,544,631 to 4,545,608 _3909 Position (kb) 4542 4543 4544 4545Strain fitness (log2 ratio) -2 -1 0 1at 4541.845 kb on + strand, within Pf6N2E2_3906at 4541.845 kb on + strand, within Pf6N2E2_3906at 4541.846 kb on - strand, within Pf6N2E2_3906at 4541.846 kb on - strand, within Pf6N2E2_3906at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.522 kb on + strandat 4542.522 kb on + strandat 4542.522 kb on + strandat 4542.523 kb on - strandat 4542.523 kb on - strandat 4542.524 kb on + strandat 4542.524 kb on + strandat 4542.525 kb on - strandat 4542.549 kb on - strandat 4542.764 kb on + strandat 4542.765 kb on - strandat 4542.984 kb on - strand, within Pf6N2E2_3908at 4543.095 kb on - strand, within Pf6N2E2_3908at 4543.095 kb on - strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.099 kb on - strand, within Pf6N2E2_3908at 4543.157 kb on + strand, within Pf6N2E2_3908at 4543.187 kb on + strand, within Pf6N2E2_3908at 4543.187 kb on + strand, within Pf6N2E2_3908at 4543.187 kb on + strand, within Pf6N2E2_3908at 4543.188 kb on - strand, within Pf6N2E2_3908at 4543.188 kb on - strand, within Pf6N2E2_3908at 4543.188 kb on - strand, within Pf6N2E2_3908at 4543.188 kb on - strand, within Pf6N2E2_3908at 4543.344 kb on - strand, within Pf6N2E2_3908at 4543.391 kb on + strand, within Pf6N2E2_3908at 4543.392 kb on - strand, within Pf6N2E2_3908at 4543.392 kb on - strand, within Pf6N2E2_3908at 4543.478 kb on + strand, within Pf6N2E2_3908at 4543.478 kb on + strand, within Pf6N2E2_3908at 4543.557 kb on - strand, within Pf6N2E2_3908at 4543.557 kb on - strand, within Pf6N2E2_3908at 4543.666 kb on + strand, within Pf6N2E2_3908at 4543.694 kb on + strand, within Pf6N2E2_3908at 4543.695 kb on - strand, within Pf6N2E2_3908at 4543.695 kb on - strand, within Pf6N2E2_3908at 4543.697 kb on + strand, within Pf6N2E2_3908at 4543.697 kb on + strand, within Pf6N2E2_3908at 4543.727 kb on + strand, within Pf6N2E2_3908at 4543.776 kb on - strand, within Pf6N2E2_3908at 4543.865 kb on + strand, within Pf6N2E2_3908at 4543.866 kb on - strand, within Pf6N2E2_3908at 4544.349 kb on - strandat 4544.374 kb on + strandat 4544.374 kb on + strandat 4544.374 kb on + strandat 4544.375 kb on - strandat 4544.375 kb on - strandat 4544.375 kb on - strandat 4544.508 kb on - strandat 4544.770 kb on - strand, within Pf6N2E2_3909at 4545.045 kb on + strand, within Pf6N2E2_3909at 4545.046 kb on - strand, within Pf6N2E2_3909at 4545.046 kb on - strand, within Pf6N2E2_3909at 4545.046 kb on - strand, within Pf6N2E2_3909at 4545.046 kb on - strand, within Pf6N2E2_3909at 4545.100 kb on + strand, within Pf6N2E2_3909at 4545.162 kb on + strand, within Pf6N2E2_3909at 4545.162 kb on + strand, within Pf6N2E2_3909at 4545.162 kb on + strand, within Pf6N2E2_3909at 4545.162 kb on + strand, within Pf6N2E2_3909at 4545.162 kb on + strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.163 kb on - strand, within Pf6N2E2_3909at 4545.336 kb on + strand, within Pf6N2E2_3909at 4545.336 kb on + strand, within Pf6N2E2_3909

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M
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4,541,845 + Pf6N2E2_3906 0.87 +0.1
4,541,845 + Pf6N2E2_3906 0.87 +0.5
4,541,846 - Pf6N2E2_3906 0.87 +0.6
4,541,846 - Pf6N2E2_3906 0.87 -0.8
4,542,383 + Pf6N2E2_3907 0.62 +1.0
4,542,383 + Pf6N2E2_3907 0.62 -1.6
4,542,383 + Pf6N2E2_3907 0.62 -1.2
4,542,383 + Pf6N2E2_3907 0.62 -0.7
4,542,383 + Pf6N2E2_3907 0.62 +0.5
4,542,384 - Pf6N2E2_3907 0.63 -1.8
4,542,384 - Pf6N2E2_3907 0.63 +0.8
4,542,384 - Pf6N2E2_3907 0.63 +0.1
4,542,384 - Pf6N2E2_3907 0.63 -0.3
4,542,384 - Pf6N2E2_3907 0.63 -1.1
4,542,384 - Pf6N2E2_3907 0.63 -0.7
4,542,522 + +0.6
4,542,522 + +1.4
4,542,522 + +0.8
4,542,523 - +0.3
4,542,523 - +0.9
4,542,524 + -0.4
4,542,524 + +0.3
4,542,525 - -0.4
4,542,549 - +0.7
4,542,764 + +0.7
4,542,765 - -0.2
4,542,984 - Pf6N2E2_3908 0.13 -1.3
4,543,095 - Pf6N2E2_3908 0.20 -0.3
4,543,095 - Pf6N2E2_3908 0.20 -0.3
4,543,098 + Pf6N2E2_3908 0.20 -0.1
4,543,098 + Pf6N2E2_3908 0.20 -1.1
4,543,098 + Pf6N2E2_3908 0.20 +0.9
4,543,098 + Pf6N2E2_3908 0.20 -1.1
4,543,099 - Pf6N2E2_3908 0.20 +0.9
4,543,157 + Pf6N2E2_3908 0.23 -1.9
4,543,187 + Pf6N2E2_3908 0.25 -0.4
4,543,187 + Pf6N2E2_3908 0.25 -1.0
4,543,187 + Pf6N2E2_3908 0.25 -1.2
4,543,188 - Pf6N2E2_3908 0.25 -0.3
4,543,188 - Pf6N2E2_3908 0.25 -1.9
4,543,188 - Pf6N2E2_3908 0.25 +0.3
4,543,188 - Pf6N2E2_3908 0.25 -1.0
4,543,344 - Pf6N2E2_3908 0.35 +0.3
4,543,391 + Pf6N2E2_3908 0.38 -0.1
4,543,392 - Pf6N2E2_3908 0.38 -0.7
4,543,392 - Pf6N2E2_3908 0.38 -0.4
4,543,478 + Pf6N2E2_3908 0.44 -0.6
4,543,478 + Pf6N2E2_3908 0.44 -0.8
4,543,557 - Pf6N2E2_3908 0.48 -0.6
4,543,557 - Pf6N2E2_3908 0.48 -1.0
4,543,666 + Pf6N2E2_3908 0.55 -1.0
4,543,694 + Pf6N2E2_3908 0.57 -1.4
4,543,695 - Pf6N2E2_3908 0.57 -1.2
4,543,695 - Pf6N2E2_3908 0.57 -1.4
4,543,697 + Pf6N2E2_3908 0.57 +0.1
4,543,697 + Pf6N2E2_3908 0.57 -0.1
4,543,727 + Pf6N2E2_3908 0.59 -0.9
4,543,776 - Pf6N2E2_3908 0.62 +0.1
4,543,865 + Pf6N2E2_3908 0.68 -0.3
4,543,866 - Pf6N2E2_3908 0.68 +0.1
4,544,349 - -0.9
4,544,374 + -2.4
4,544,374 + +0.9
4,544,374 + -0.1
4,544,375 - +0.9
4,544,375 - -1.0
4,544,375 - -2.5
4,544,508 - -0.0
4,544,770 - Pf6N2E2_3909 0.14 +0.1
4,545,045 + Pf6N2E2_3909 0.42 -2.1
4,545,046 - Pf6N2E2_3909 0.42 +0.3
4,545,046 - Pf6N2E2_3909 0.42 -0.2
4,545,046 - Pf6N2E2_3909 0.42 +0.5
4,545,046 - Pf6N2E2_3909 0.42 -1.5
4,545,100 + Pf6N2E2_3909 0.48 +0.9
4,545,162 + Pf6N2E2_3909 0.54 -0.1
4,545,162 + Pf6N2E2_3909 0.54 -0.2
4,545,162 + Pf6N2E2_3909 0.54 +0.6
4,545,162 + Pf6N2E2_3909 0.54 -1.5
4,545,162 + Pf6N2E2_3909 0.54 +1.1
4,545,163 - Pf6N2E2_3909 0.54 -0.4
4,545,163 - Pf6N2E2_3909 0.54 -1.4
4,545,163 - Pf6N2E2_3909 0.54 +0.0
4,545,163 - Pf6N2E2_3909 0.54 -2.0
4,545,163 - Pf6N2E2_3909 0.54 -0.5
4,545,163 - Pf6N2E2_3909 0.54 -0.8
4,545,336 + Pf6N2E2_3909 0.72 -1.4
4,545,336 + Pf6N2E2_3909 0.72 -1.0

Or see this region's nucleotide sequence