Experiment: Nickel (II) chloride 0.0025 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3626 and Pf6N2E2_3627 are separated by 42 nucleotides Pf6N2E2_3627 and Pf6N2E2_3628 are separated by 19 nucleotides Pf6N2E2_3628 and Pf6N2E2_3629 are separated by 193 nucleotides
Pf6N2E2_3626 - Predicted signal transduction protein, at 4,221,644 to 4,223,182
_3626
Pf6N2E2_3627 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 4,223,225 to 4,224,040
_3627
Pf6N2E2_3628 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 4,224,060 to 4,224,920
_3628
Pf6N2E2_3629 - DnaK-related protein, at 4,225,114 to 4,226,874
_3629
Position (kb)
4224
4225 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.112 kb on + strand at 4223.113 kb on - strand at 4223.113 kb on - strand at 4223.113 kb on - strand at 4223.113 kb on - strand at 4223.113 kb on - strand at 4223.158 kb on + strand at 4223.158 kb on + strand at 4223.158 kb on + strand at 4223.158 kb on + strand at 4223.159 kb on - strand at 4223.159 kb on - strand at 4223.159 kb on - strand at 4223.159 kb on - strand at 4223.164 kb on + strand at 4223.189 kb on + strand at 4223.189 kb on + strand at 4223.190 kb on - strand at 4223.190 kb on - strand at 4223.474 kb on + strand, within Pf6N2E2_3627 at 4223.474 kb on + strand, within Pf6N2E2_3627 at 4223.474 kb on + strand, within Pf6N2E2_3627 at 4223.474 kb on + strand, within Pf6N2E2_3627 at 4223.474 kb on + strand, within Pf6N2E2_3627 at 4223.478 kb on + strand, within Pf6N2E2_3627 at 4223.478 kb on + strand, within Pf6N2E2_3627 at 4223.483 kb on + strand, within Pf6N2E2_3627 at 4223.483 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.552 kb on + strand, within Pf6N2E2_3627 at 4223.681 kb on + strand, within Pf6N2E2_3627 at 4223.744 kb on + strand, within Pf6N2E2_3627 at 4223.744 kb on + strand, within Pf6N2E2_3627 at 4223.744 kb on + strand, within Pf6N2E2_3627 at 4223.942 kb on + strand, within Pf6N2E2_3627 at 4223.942 kb on + strand, within Pf6N2E2_3627 at 4223.942 kb on + strand, within Pf6N2E2_3627 at 4224.048 kb on + strand at 4224.048 kb on + strand at 4224.048 kb on + strand at 4224.922 kb on + strand at 4224.923 kb on - strand at 4224.949 kb on - strand at 4225.035 kb on + strand at 4225.035 kb on + strand at 4225.035 kb on + strand at 4225.035 kb on + strand at 4225.035 kb on + strand at 4225.035 kb on + strand at 4225.036 kb on - strand at 4225.036 kb on - strand at 4225.036 kb on - strand at 4225.036 kb on - strand at 4225.036 kb on - strand at 4225.036 kb on - strand at 4225.039 kb on + strand at 4225.039 kb on + strand at 4225.039 kb on + strand at 4225.039 kb on + strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.040 kb on - strand at 4225.057 kb on + strand at 4225.057 kb on + strand at 4225.058 kb on - strand at 4225.066 kb on + strand at 4225.066 kb on + strand at 4225.087 kb on + strand at 4225.087 kb on + strand at 4225.087 kb on + strand at 4225.087 kb on + strand at 4225.088 kb on - strand at 4225.088 kb on - strand at 4225.139 kb on + strand at 4225.139 kb on + strand at 4225.140 kb on - strand at 4225.188 kb on + strand at 4225.188 kb on + strand at 4225.189 kb on - strand at 4225.261 kb on + strand at 4225.261 kb on + strand at 4225.262 kb on - strand at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.345 kb on + strand, within Pf6N2E2_3629 at 4225.346 kb on - strand, within Pf6N2E2_3629 at 4225.346 kb on - strand, within Pf6N2E2_3629 at 4225.346 kb on - strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.348 kb on + strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.349 kb on - strand, within Pf6N2E2_3629 at 4225.495 kb on + strand, within Pf6N2E2_3629 at 4225.495 kb on + strand, within Pf6N2E2_3629 at 4225.496 kb on - strand, within Pf6N2E2_3629 at 4225.496 kb on - strand, within Pf6N2E2_3629 at 4225.496 kb on - strand, within Pf6N2E2_3629 at 4225.532 kb on + strand, within Pf6N2E2_3629 at 4225.583 kb on + strand, within Pf6N2E2_3629 at 4225.584 kb on - strand, within Pf6N2E2_3629 at 4225.584 kb on - strand, within Pf6N2E2_3629 at 4225.584 kb on - strand, within Pf6N2E2_3629 at 4225.584 kb on - strand, within Pf6N2E2_3629 at 4225.585 kb on + strand, within Pf6N2E2_3629 at 4225.586 kb on - strand, within Pf6N2E2_3629 at 4225.586 kb on - strand, within Pf6N2E2_3629 at 4225.586 kb on - strand, within Pf6N2E2_3629 at 4225.586 kb on - strand, within Pf6N2E2_3629 at 4225.720 kb on + strand, within Pf6N2E2_3629 at 4225.720 kb on + strand, within Pf6N2E2_3629 at 4225.720 kb on + strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629 at 4225.721 kb on - strand, within Pf6N2E2_3629
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M remove 4,223,112 + +0.4 4,223,112 + -0.8 4,223,112 + +0.7 4,223,112 + +0.4 4,223,112 + +1.6 4,223,112 + -0.2 4,223,112 + +1.7 4,223,113 - -0.0 4,223,113 - +0.4 4,223,113 - +0.9 4,223,113 - -0.3 4,223,113 - -0.5 4,223,158 + -0.8 4,223,158 + +1.1 4,223,158 + +0.6 4,223,158 + +0.6 4,223,159 - +0.2 4,223,159 - +0.9 4,223,159 - -0.2 4,223,159 - +1.0 4,223,164 + +0.2 4,223,189 + -1.0 4,223,189 + +0.1 4,223,190 - +0.9 4,223,190 - -0.9 4,223,474 + Pf6N2E2_3627 0.31 +1.0 4,223,474 + Pf6N2E2_3627 0.31 -1.8 4,223,474 + Pf6N2E2_3627 0.31 -0.7 4,223,474 + Pf6N2E2_3627 0.31 -0.5 4,223,474 + Pf6N2E2_3627 0.31 -0.9 4,223,478 + Pf6N2E2_3627 0.31 +0.7 4,223,478 + Pf6N2E2_3627 0.31 +1.0 4,223,483 + Pf6N2E2_3627 0.32 -0.0 4,223,483 + Pf6N2E2_3627 0.32 +0.1 4,223,552 + Pf6N2E2_3627 0.40 -0.8 4,223,552 + Pf6N2E2_3627 0.40 +1.2 4,223,552 + Pf6N2E2_3627 0.40 -1.0 4,223,552 + Pf6N2E2_3627 0.40 +0.6 4,223,552 + Pf6N2E2_3627 0.40 -2.5 4,223,552 + Pf6N2E2_3627 0.40 -0.6 4,223,552 + Pf6N2E2_3627 0.40 +1.1 4,223,552 + Pf6N2E2_3627 0.40 +0.6 4,223,552 + Pf6N2E2_3627 0.40 +0.1 4,223,552 + Pf6N2E2_3627 0.40 +0.7 4,223,552 + Pf6N2E2_3627 0.40 +0.2 4,223,552 + Pf6N2E2_3627 0.40 -0.2 4,223,552 + Pf6N2E2_3627 0.40 -1.0 4,223,681 + Pf6N2E2_3627 0.56 +1.3 4,223,744 + Pf6N2E2_3627 0.64 -1.5 4,223,744 + Pf6N2E2_3627 0.64 +0.2 4,223,744 + Pf6N2E2_3627 0.64 +0.8 4,223,942 + Pf6N2E2_3627 0.88 -1.0 4,223,942 + Pf6N2E2_3627 0.88 -0.7 4,223,942 + Pf6N2E2_3627 0.88 +1.3 4,224,048 + +0.5 4,224,048 + +0.1 4,224,048 + +0.7 4,224,922 + -0.3 4,224,923 - -0.1 4,224,949 - -0.7 4,225,035 + +0.2 4,225,035 + -0.2 4,225,035 + -0.2 4,225,035 + +0.7 4,225,035 + -1.7 4,225,035 + +0.9 4,225,036 - -0.1 4,225,036 - -0.3 4,225,036 - +1.6 4,225,036 - -0.5 4,225,036 - -0.3 4,225,036 - -0.3 4,225,039 + -0.1 4,225,039 + -0.7 4,225,039 + +0.7 4,225,039 + +1.1 4,225,040 - -0.1 4,225,040 - +0.0 4,225,040 - -0.1 4,225,040 - +1.0 4,225,040 - +1.8 4,225,040 - -0.8 4,225,040 - +0.3 4,225,040 - +0.7 4,225,040 - -0.1 4,225,040 - -0.5 4,225,057 + +0.2 4,225,057 + +0.5 4,225,058 - -0.8 4,225,066 + -1.2 4,225,066 + +1.1 4,225,087 + -0.2 4,225,087 + +1.4 4,225,087 + -0.0 4,225,087 + -0.0 4,225,088 - +1.1 4,225,088 - +1.5 4,225,139 + +1.4 4,225,139 + +1.2 4,225,140 - -0.2 4,225,188 + +1.8 4,225,188 + +1.0 4,225,189 - -0.2 4,225,261 + -1.9 4,225,261 + +0.4 4,225,262 - +1.0 4,225,345 + Pf6N2E2_3629 0.13 -0.2 4,225,345 + Pf6N2E2_3629 0.13 +0.5 4,225,345 + Pf6N2E2_3629 0.13 +0.3 4,225,345 + Pf6N2E2_3629 0.13 -0.5 4,225,345 + Pf6N2E2_3629 0.13 +0.2 4,225,345 + Pf6N2E2_3629 0.13 +0.4 4,225,345 + Pf6N2E2_3629 0.13 -1.0 4,225,346 - Pf6N2E2_3629 0.13 +0.1 4,225,346 - Pf6N2E2_3629 0.13 +0.9 4,225,346 - Pf6N2E2_3629 0.13 +0.3 4,225,348 + Pf6N2E2_3629 0.13 -0.2 4,225,348 + Pf6N2E2_3629 0.13 +0.8 4,225,348 + Pf6N2E2_3629 0.13 +0.6 4,225,348 + Pf6N2E2_3629 0.13 +1.5 4,225,348 + Pf6N2E2_3629 0.13 +0.9 4,225,348 + Pf6N2E2_3629 0.13 -0.5 4,225,348 + Pf6N2E2_3629 0.13 +2.1 4,225,348 + Pf6N2E2_3629 0.13 -0.2 4,225,349 - Pf6N2E2_3629 0.13 -0.7 4,225,349 - Pf6N2E2_3629 0.13 +0.3 4,225,349 - Pf6N2E2_3629 0.13 +0.2 4,225,349 - Pf6N2E2_3629 0.13 -0.3 4,225,349 - Pf6N2E2_3629 0.13 -0.5 4,225,349 - Pf6N2E2_3629 0.13 -1.0 4,225,349 - Pf6N2E2_3629 0.13 -2.2 4,225,349 - Pf6N2E2_3629 0.13 -0.4 4,225,495 + Pf6N2E2_3629 0.22 -0.1 4,225,495 + Pf6N2E2_3629 0.22 -0.0 4,225,496 - Pf6N2E2_3629 0.22 -1.2 4,225,496 - Pf6N2E2_3629 0.22 +0.5 4,225,496 - Pf6N2E2_3629 0.22 +0.5 4,225,532 + Pf6N2E2_3629 0.24 +1.2 4,225,583 + Pf6N2E2_3629 0.27 +0.0 4,225,584 - Pf6N2E2_3629 0.27 +0.3 4,225,584 - Pf6N2E2_3629 0.27 -0.5 4,225,584 - Pf6N2E2_3629 0.27 +0.2 4,225,584 - Pf6N2E2_3629 0.27 +1.5 4,225,585 + Pf6N2E2_3629 0.27 +0.5 4,225,586 - Pf6N2E2_3629 0.27 -2.8 4,225,586 - Pf6N2E2_3629 0.27 -0.7 4,225,586 - Pf6N2E2_3629 0.27 -1.9 4,225,586 - Pf6N2E2_3629 0.27 +0.0 4,225,720 + Pf6N2E2_3629 0.34 -0.0 4,225,720 + Pf6N2E2_3629 0.34 -0.1 4,225,720 + Pf6N2E2_3629 0.34 +0.3 4,225,721 - Pf6N2E2_3629 0.34 -0.8 4,225,721 - Pf6N2E2_3629 0.34 +1.1 4,225,721 - Pf6N2E2_3629 0.34 +1.1 4,225,721 - Pf6N2E2_3629 0.34 -1.3 4,225,721 - Pf6N2E2_3629 0.34 +1.2 4,225,721 - Pf6N2E2_3629 0.34 -2.1 4,225,721 - Pf6N2E2_3629 0.34 -0.6 4,225,721 - Pf6N2E2_3629 0.34 -0.8 4,225,721 - Pf6N2E2_3629 0.34 -0.8
Or see this region's nucleotide sequence