Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1707

Experiment: Nickel (II) chloride 0.0025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1705 and Pf6N2E2_1706 overlap by 4 nucleotidesPf6N2E2_1706 and Pf6N2E2_1707 are separated by 4 nucleotidesPf6N2E2_1707 and Pf6N2E2_1708 overlap by 42 nucleotidesPf6N2E2_1708 and Pf6N2E2_1709 are separated by 291 nucleotides Pf6N2E2_1705 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 2,013,787 to 2,014,557 _1705 Pf6N2E2_1706 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 2,014,554 to 2,015,525 _1706 Pf6N2E2_1707 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 2,015,530 to 2,016,915 _1707 Pf6N2E2_1708 - hypothetical protein, at 2,016,874 to 2,017,026 _1708 Pf6N2E2_1709 - multidrug resistance transporter, Bcr/CflA family, at 2,017,318 to 2,018,538 _1709 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2014.573 kb on + strandat 2014.574 kb on - strandat 2014.574 kb on - strandat 2014.611 kb on + strandat 2015.187 kb on + strand, within Pf6N2E2_1706at 2015.199 kb on + strand, within Pf6N2E2_1706at 2015.199 kb on + strand, within Pf6N2E2_1706at 2015.199 kb on + strand, within Pf6N2E2_1706at 2015.200 kb on - strand, within Pf6N2E2_1706at 2015.515 kb on + strandat 2015.515 kb on + strandat 2015.516 kb on - strandat 2015.757 kb on - strand, within Pf6N2E2_1707at 2016.036 kb on - strand, within Pf6N2E2_1707at 2016.044 kb on + strand, within Pf6N2E2_1707at 2016.044 kb on + strand, within Pf6N2E2_1707at 2016.443 kb on + strand, within Pf6N2E2_1707at 2016.444 kb on - strand, within Pf6N2E2_1707at 2016.459 kb on - strand, within Pf6N2E2_1707at 2016.536 kb on + strand, within Pf6N2E2_1707at 2016.536 kb on + strand, within Pf6N2E2_1707at 2016.536 kb on + strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.762 kb on - strand, within Pf6N2E2_1707at 2016.766 kb on - strand, within Pf6N2E2_1707at 2016.852 kb on - strandat 2017.127 kb on + strandat 2017.128 kb on - strandat 2017.128 kb on - strandat 2017.128 kb on - strandat 2017.128 kb on - strandat 2017.138 kb on + strandat 2017.139 kb on - strandat 2017.139 kb on - strandat 2017.139 kb on - strandat 2017.195 kb on + strandat 2017.300 kb on + strandat 2017.301 kb on - strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.317 kb on + strandat 2017.318 kb on - strandat 2017.318 kb on - strandat 2017.318 kb on - strandat 2017.318 kb on - strandat 2017.904 kb on + strand, within Pf6N2E2_1709at 2017.904 kb on + strand, within Pf6N2E2_1709

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.0025 M
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2,014,573 + -0.1
2,014,574 - -2.1
2,014,574 - +0.9
2,014,611 + +0.5
2,015,187 + Pf6N2E2_1706 0.65 +0.6
2,015,199 + Pf6N2E2_1706 0.66 +1.2
2,015,199 + Pf6N2E2_1706 0.66 -0.4
2,015,199 + Pf6N2E2_1706 0.66 +0.1
2,015,200 - Pf6N2E2_1706 0.66 -0.9
2,015,515 + -0.0
2,015,515 + +0.8
2,015,516 - +0.9
2,015,757 - Pf6N2E2_1707 0.16 -0.4
2,016,036 - Pf6N2E2_1707 0.37 +0.9
2,016,044 + Pf6N2E2_1707 0.37 -0.1
2,016,044 + Pf6N2E2_1707 0.37 +1.6
2,016,443 + Pf6N2E2_1707 0.66 -2.3
2,016,444 - Pf6N2E2_1707 0.66 -0.6
2,016,459 - Pf6N2E2_1707 0.67 +0.2
2,016,536 + Pf6N2E2_1707 0.73 -0.8
2,016,536 + Pf6N2E2_1707 0.73 -0.4
2,016,536 + Pf6N2E2_1707 0.73 -1.6
2,016,762 - Pf6N2E2_1707 0.89 -1.1
2,016,762 - Pf6N2E2_1707 0.89 -0.8
2,016,762 - Pf6N2E2_1707 0.89 +1.9
2,016,762 - Pf6N2E2_1707 0.89 -0.1
2,016,762 - Pf6N2E2_1707 0.89 +0.6
2,016,762 - Pf6N2E2_1707 0.89 -0.9
2,016,762 - Pf6N2E2_1707 0.89 -0.5
2,016,766 - Pf6N2E2_1707 0.89 -1.7
2,016,852 - +1.4
2,017,127 + +1.8
2,017,128 - +0.4
2,017,128 - +0.5
2,017,128 - +1.9
2,017,128 - -0.5
2,017,138 + +0.3
2,017,139 - -2.0
2,017,139 - +1.2
2,017,139 - +1.3
2,017,195 + -0.3
2,017,300 + -1.9
2,017,301 - -0.1
2,017,317 + +0.4
2,017,317 + +0.1
2,017,317 + +1.3
2,017,317 + -2.5
2,017,317 + -0.0
2,017,317 + +0.1
2,017,317 + +0.3
2,017,317 + +4.0
2,017,318 - +0.6
2,017,318 - -0.3
2,017,318 - +0.9
2,017,318 - +0.6
2,017,904 + Pf6N2E2_1709 0.48 -2.4
2,017,904 + Pf6N2E2_1709 0.48 +0.3

Or see this region's nucleotide sequence