Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19115

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19105 and CSW01_19110 are separated by 71 nucleotidesCSW01_19110 and CSW01_19115 are separated by 200 nucleotidesCSW01_19115 and CSW01_19120 are separated by 151 nucleotidesCSW01_19120 and CSW01_19125 overlap by 4 nucleotides CSW01_19105: CSW01_19105 - TetR/AcrR family transcriptional regulator, at 951,843 to 952,418 _19105 CSW01_19110: CSW01_19110 - LysE family translocator, at 952,490 to 953,119 _19110 CSW01_19115: CSW01_19115 - AraC family transcriptional regulator, at 953,320 to 954,153 _19115 CSW01_19120: CSW01_19120 - branched-chain amino acid ABC transporter permease, at 954,305 to 955,024 _19120 CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338 _19125 Position (kb) 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2at 952.365 kb on + strandat 952.365 kb on + strandat 952.582 kb on + strand, within CSW01_19110at 952.604 kb on + strand, within CSW01_19110at 952.613 kb on - strand, within CSW01_19110at 952.645 kb on - strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.659 kb on - strand, within CSW01_19110at 952.661 kb on - strand, within CSW01_19110at 952.708 kb on - strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.810 kb on + strand, within CSW01_19110at 952.818 kb on - strand, within CSW01_19110at 952.831 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.868 kb on - strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.870 kb on + strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.878 kb on - strand, within CSW01_19110at 952.955 kb on + strand, within CSW01_19110at 952.990 kb on - strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.048 kb on + strand, within CSW01_19110at 953.245 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.395 kb on - strandat 953.395 kb on - strandat 953.397 kb on + strandat 953.409 kb on + strand, within CSW01_19115at 953.438 kb on + strand, within CSW01_19115at 953.446 kb on + strand, within CSW01_19115at 953.453 kb on + strand, within CSW01_19115at 953.453 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.515 kb on + strand, within CSW01_19115at 953.573 kb on - strand, within CSW01_19115at 953.587 kb on - strand, within CSW01_19115at 953.788 kb on - strand, within CSW01_19115at 953.990 kb on - strand, within CSW01_19115at 954.015 kb on - strand, within CSW01_19115at 954.029 kb on + strand, within CSW01_19115at 954.040 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115at 954.128 kb on + strandat 954.128 kb on + strandat 954.136 kb on - strandat 954.136 kb on - strandat 954.136 kb on - strandat 954.197 kb on - strandat 954.208 kb on + strandat 954.216 kb on - strandat 954.216 kb on - strandat 954.216 kb on - strandat 954.220 kb on + strandat 954.248 kb on - strandat 954.301 kb on + strandat 954.317 kb on + strandat 954.342 kb on + strandat 954.382 kb on + strand, within CSW01_19120at 954.398 kb on - strand, within CSW01_19120at 954.398 kb on - strand, within CSW01_19120at 954.406 kb on - strand, within CSW01_19120at 954.481 kb on + strand, within CSW01_19120at 954.500 kb on - strand, within CSW01_19120at 954.544 kb on - strand, within CSW01_19120at 954.602 kb on - strand, within CSW01_19120at 954.659 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.673 kb on - strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.734 kb on + strand, within CSW01_19120at 954.788 kb on + strand, within CSW01_19120at 954.804 kb on + strand, within CSW01_19120at 954.822 kb on - strand, within CSW01_19120at 954.918 kb on - strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.959 kb on - strandat 955.136 kb on + strand, within CSW01_19125

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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952,365 + -0.5
952,365 + +1.1
952,582 + CSW01_19110 0.15 +0.1
952,604 + CSW01_19110 0.18 +0.6
952,613 - CSW01_19110 0.20 +0.1
952,645 - CSW01_19110 0.25 -0.6
952,653 + CSW01_19110 0.26 -0.0
952,653 + CSW01_19110 0.26 +0.6
952,659 - CSW01_19110 0.27 +2.1
952,661 - CSW01_19110 0.27 +0.9
952,708 - CSW01_19110 0.35 +1.4
952,810 + CSW01_19110 0.51 +0.8
952,810 + CSW01_19110 0.51 +0.8
952,810 + CSW01_19110 0.51 +0.4
952,810 + CSW01_19110 0.51 +0.4
952,818 - CSW01_19110 0.52 -2.5
952,831 - CSW01_19110 0.54 +0.7
952,868 - CSW01_19110 0.60 +0.9
952,868 - CSW01_19110 0.60 +1.5
952,870 + CSW01_19110 0.60 +0.0
952,870 + CSW01_19110 0.60 -1.2
952,870 + CSW01_19110 0.60 +0.4
952,878 - CSW01_19110 0.62 -1.7
952,878 - CSW01_19110 0.62 +0.2
952,955 + CSW01_19110 0.74 +0.0
952,990 - CSW01_19110 0.79 +0.1
953,048 + CSW01_19110 0.89 -0.4
953,048 + CSW01_19110 0.89 -0.3
953,245 + +0.4
953,387 + -0.5
953,387 + +0.4
953,387 + +0.0
953,387 + -0.7
953,395 - -0.2
953,395 - +0.5
953,397 + +0.4
953,409 + CSW01_19115 0.11 +0.1
953,438 + CSW01_19115 0.14 -0.1
953,446 + CSW01_19115 0.15 +0.2
953,453 + CSW01_19115 0.16 +0.7
953,453 - CSW01_19115 0.16 +1.4
953,455 - CSW01_19115 0.16 -0.7
953,455 - CSW01_19115 0.16 +0.3
953,455 - CSW01_19115 0.16 -0.6
953,515 + CSW01_19115 0.23 +0.6
953,573 - CSW01_19115 0.30 -0.1
953,587 - CSW01_19115 0.32 +0.3
953,788 - CSW01_19115 0.56 -0.2
953,990 - CSW01_19115 0.80 -0.4
954,015 - CSW01_19115 0.83 +0.7
954,029 + CSW01_19115 0.85 +1.5
954,040 + CSW01_19115 0.86 +0.0
954,051 + CSW01_19115 0.88 -0.3
954,051 + CSW01_19115 0.88 +0.3
954,128 + -0.6
954,128 + +0.8
954,136 - +1.2
954,136 - +0.5
954,136 - +0.1
954,197 - +0.7
954,208 + +1.1
954,216 - +0.6
954,216 - -0.9
954,216 - -0.2
954,220 + +0.2
954,248 - +0.1
954,301 + +1.2
954,317 + -0.1
954,342 + +1.1
954,382 + CSW01_19120 0.11 -0.3
954,398 - CSW01_19120 0.13 -0.3
954,398 - CSW01_19120 0.13 -0.0
954,406 - CSW01_19120 0.14 +0.1
954,481 + CSW01_19120 0.24 -0.2
954,500 - CSW01_19120 0.27 +0.5
954,544 - CSW01_19120 0.33 -0.1
954,602 - CSW01_19120 0.41 -0.0
954,659 - CSW01_19120 0.49 +0.3
954,671 - CSW01_19120 0.51 +0.6
954,671 - CSW01_19120 0.51 +1.5
954,671 - CSW01_19120 0.51 +0.8
954,673 - CSW01_19120 0.51 +0.1
954,729 + CSW01_19120 0.59 +1.2
954,729 + CSW01_19120 0.59 -0.4
954,729 + CSW01_19120 0.59 +0.3
954,734 + CSW01_19120 0.60 +0.3
954,788 + CSW01_19120 0.67 -0.0
954,804 + CSW01_19120 0.69 +0.3
954,822 - CSW01_19120 0.72 +0.4
954,918 - CSW01_19120 0.85 -1.4
954,920 + CSW01_19120 0.85 -0.6
954,920 + CSW01_19120 0.85 +1.3
954,920 + CSW01_19120 0.85 -0.6
954,928 - CSW01_19120 0.87 +0.6
954,928 - CSW01_19120 0.87 -0.6
954,928 - CSW01_19120 0.87 +0.4
954,959 - -0.2
955,136 + CSW01_19125 0.36 +0.4

Or see this region's nucleotide sequence