Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18020

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18010 and CSW01_18015 are separated by 103 nucleotidesCSW01_18015 and CSW01_18020 are separated by 99 nucleotidesCSW01_18020 and CSW01_18025 are separated by 36 nucleotidesCSW01_18025 and CSW01_18030 are separated by 36 nucleotides CSW01_18010: CSW01_18010 - cytochrome C554, at 708,387 to 708,695 _18010 CSW01_18015: CSW01_18015 - TetR/AcrR family transcriptional regulator, at 708,799 to 709,533 _18015 CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901 _18020 CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519 _18025 CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675 _18030 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2at 708.757 kb on - strandat 708.779 kb on + strandat 708.787 kb on - strandat 708.872 kb on + strandat 708.882 kb on + strand, within CSW01_18015at 708.904 kb on - strand, within CSW01_18015at 709.044 kb on + strand, within CSW01_18015at 709.044 kb on + strand, within CSW01_18015at 709.044 kb on + strand, within CSW01_18015at 709.052 kb on - strand, within CSW01_18015at 709.052 kb on - strand, within CSW01_18015at 709.058 kb on - strand, within CSW01_18015at 709.084 kb on - strand, within CSW01_18015at 709.084 kb on - strand, within CSW01_18015at 709.199 kb on + strand, within CSW01_18015at 709.207 kb on - strand, within CSW01_18015at 709.250 kb on - strand, within CSW01_18015at 709.341 kb on - strand, within CSW01_18015at 709.412 kb on - strand, within CSW01_18015at 709.443 kb on + strand, within CSW01_18015at 709.443 kb on + strand, within CSW01_18015at 709.456 kb on - strand, within CSW01_18015at 709.466 kb on - strandat 709.487 kb on - strandat 709.748 kb on - strandat 709.752 kb on + strandat 709.752 kb on + strandat 709.760 kb on - strand, within CSW01_18020at 709.858 kb on + strand, within CSW01_18020at 709.866 kb on - strand, within CSW01_18020at 709.866 kb on - strand, within CSW01_18020at 710.181 kb on - strand, within CSW01_18020at 710.254 kb on + strand, within CSW01_18020at 710.324 kb on + strand, within CSW01_18020at 710.379 kb on - strand, within CSW01_18020at 710.390 kb on - strand, within CSW01_18020at 710.428 kb on + strand, within CSW01_18020at 710.430 kb on + strand, within CSW01_18020at 710.567 kb on + strand, within CSW01_18020at 710.582 kb on - strand, within CSW01_18020at 710.605 kb on + strand, within CSW01_18020at 710.613 kb on - strand, within CSW01_18020at 710.682 kb on + strand, within CSW01_18020at 710.843 kb on + strandat 710.892 kb on + strandat 710.958 kb on - strandat 711.016 kb on - strand, within CSW01_18025at 711.018 kb on + strand, within CSW01_18025at 711.019 kb on + strand, within CSW01_18025at 711.026 kb on - strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.069 kb on + strand, within CSW01_18025at 711.074 kb on + strand, within CSW01_18025at 711.079 kb on + strand, within CSW01_18025at 711.082 kb on - strand, within CSW01_18025at 711.100 kb on + strand, within CSW01_18025at 711.124 kb on + strand, within CSW01_18025at 711.199 kb on + strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.260 kb on - strand, within CSW01_18025at 711.285 kb on + strand, within CSW01_18025at 711.372 kb on + strand, within CSW01_18025at 711.385 kb on + strand, within CSW01_18025at 711.587 kb on - strand, within CSW01_18030at 711.637 kb on - strand, within CSW01_18030at 711.639 kb on + strand, within CSW01_18030at 711.647 kb on - strand, within CSW01_18030at 711.683 kb on - strandat 711.683 kb on - strandat 711.710 kb on + strandat 711.737 kb on + strandat 711.761 kb on - strandat 711.767 kb on + strandat 711.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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708,757 - -0.4
708,779 + +0.2
708,787 - +2.2
708,872 + +0.2
708,882 + CSW01_18015 0.11 -0.7
708,904 - CSW01_18015 0.14 -0.6
709,044 + CSW01_18015 0.33 -0.1
709,044 + CSW01_18015 0.33 -2.7
709,044 + CSW01_18015 0.33 -0.8
709,052 - CSW01_18015 0.34 -0.6
709,052 - CSW01_18015 0.34 +0.2
709,058 - CSW01_18015 0.35 -0.3
709,084 - CSW01_18015 0.39 -0.5
709,084 - CSW01_18015 0.39 -0.7
709,199 + CSW01_18015 0.54 -0.4
709,207 - CSW01_18015 0.56 +0.7
709,250 - CSW01_18015 0.61 +0.8
709,341 - CSW01_18015 0.74 -0.8
709,412 - CSW01_18015 0.83 +0.6
709,443 + CSW01_18015 0.88 +0.4
709,443 + CSW01_18015 0.88 +0.1
709,456 - CSW01_18015 0.89 +0.1
709,466 - -0.1
709,487 - -0.8
709,748 - -0.3
709,752 + +0.8
709,752 + -0.4
709,760 - CSW01_18020 0.10 +0.1
709,858 + CSW01_18020 0.18 +0.4
709,866 - CSW01_18020 0.18 +0.6
709,866 - CSW01_18020 0.18 +2.7
710,181 - CSW01_18020 0.43 -1.4
710,254 + CSW01_18020 0.49 +0.8
710,324 + CSW01_18020 0.54 +0.9
710,379 - CSW01_18020 0.59 +0.2
710,390 - CSW01_18020 0.60 +0.1
710,428 + CSW01_18020 0.63 -0.4
710,430 + CSW01_18020 0.63 +1.4
710,567 + CSW01_18020 0.74 -0.7
710,582 - CSW01_18020 0.75 +0.5
710,605 + CSW01_18020 0.77 +0.0
710,613 - CSW01_18020 0.77 +1.1
710,682 + CSW01_18020 0.83 +0.9
710,843 + -1.4
710,892 + +0.4
710,958 - +0.4
711,016 - CSW01_18025 0.13 +0.3
711,018 + CSW01_18025 0.14 -1.6
711,019 + CSW01_18025 0.14 +1.6
711,026 - CSW01_18025 0.15 -0.4
711,041 + CSW01_18025 0.18 -1.7
711,041 + CSW01_18025 0.18 -0.2
711,069 + CSW01_18025 0.23 -0.1
711,074 + CSW01_18025 0.23 +0.5
711,079 + CSW01_18025 0.24 +0.0
711,082 - CSW01_18025 0.25 +0.7
711,100 + CSW01_18025 0.28 +0.0
711,124 + CSW01_18025 0.32 -0.1
711,199 + CSW01_18025 0.45 +0.1
711,207 - CSW01_18025 0.46 +0.1
711,207 - CSW01_18025 0.46 -0.4
711,260 - CSW01_18025 0.55 +0.4
711,285 + CSW01_18025 0.60 +0.1
711,372 + CSW01_18025 0.75 +0.2
711,385 + CSW01_18025 0.77 +0.6
711,587 - CSW01_18030 0.26 -0.2
711,637 - CSW01_18030 0.68 +0.2
711,639 + CSW01_18030 0.69 -2.0
711,647 - CSW01_18030 0.76 +0.5
711,683 - +0.2
711,683 - -0.3
711,710 + +0.5
711,737 + +0.2
711,761 - +0.7
711,767 + +0.3
711,817 - +0.9

Or see this region's nucleotide sequence