Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17475

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17465 and CSW01_17470 are separated by 271 nucleotidesCSW01_17470 and CSW01_17475 are separated by 165 nucleotidesCSW01_17475 and CSW01_17480 are separated by 300 nucleotides CSW01_17465: CSW01_17465 - DedA family protein, at 583,776 to 584,357 _17465 CSW01_17470: CSW01_17470 - DUF3069 domain-containing protein, at 584,629 to 585,066 _17470 CSW01_17475: CSW01_17475 - PTS maltose transporter subunit IIBC, at 585,232 to 586,671 _17475 CSW01_17480: CSW01_17480 - LacI family transcriptional regulator, at 586,972 to 587,964 _17480 Position (kb) 585 586 587Strain fitness (log2 ratio) -2 -1 0 1 2 3at 584.253 kb on - strand, within CSW01_17465at 584.327 kb on - strandat 584.330 kb on - strandat 584.394 kb on - strandat 584.533 kb on + strandat 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.790 kb on - strand, within CSW01_17470at 584.843 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.899 kb on + strand, within CSW01_17470at 584.938 kb on + strand, within CSW01_17470at 584.948 kb on - strand, within CSW01_17470at 584.956 kb on - strand, within CSW01_17470at 584.968 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 585.079 kb on - strandat 585.169 kb on + strandat 585.193 kb on + strandat 585.193 kb on + strandat 585.244 kb on - strandat 585.249 kb on - strandat 585.291 kb on + strandat 585.358 kb on - strandat 585.393 kb on - strand, within CSW01_17475at 585.417 kb on - strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.443 kb on + strand, within CSW01_17475at 585.567 kb on - strand, within CSW01_17475at 585.578 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.687 kb on + strand, within CSW01_17475at 585.692 kb on + strand, within CSW01_17475at 585.694 kb on + strand, within CSW01_17475at 585.762 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.902 kb on - strand, within CSW01_17475at 585.903 kb on + strand, within CSW01_17475at 585.911 kb on - strand, within CSW01_17475at 585.969 kb on - strand, within CSW01_17475at 586.096 kb on - strand, within CSW01_17475at 586.096 kb on - strand, within CSW01_17475at 586.189 kb on + strand, within CSW01_17475at 586.198 kb on - strand, within CSW01_17475at 586.365 kb on + strand, within CSW01_17475at 586.367 kb on + strand, within CSW01_17475at 586.456 kb on - strand, within CSW01_17475at 586.483 kb on + strand, within CSW01_17475at 586.587 kb on - strandat 586.597 kb on + strandat 586.605 kb on - strandat 586.666 kb on + strandat 586.666 kb on + strandat 586.674 kb on - strandat 586.686 kb on - strandat 586.882 kb on + strandat 586.971 kb on - strandat 587.008 kb on + strandat 587.087 kb on - strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.253 kb on + strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.332 kb on - strand, within CSW01_17480at 587.389 kb on - strand, within CSW01_17480at 587.443 kb on - strand, within CSW01_17480at 587.473 kb on + strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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584,253 - CSW01_17465 0.82 +1.4
584,327 - +0.0
584,330 - +0.3
584,394 - -0.4
584,533 + +0.6
584,681 + CSW01_17470 0.12 +0.9
584,681 + CSW01_17470 0.12 +1.2
584,681 + CSW01_17470 0.12 -0.1
584,681 + CSW01_17470 0.12 +0.3
584,681 + CSW01_17470 0.12 -0.6
584,681 + CSW01_17470 0.12 +0.3
584,681 + CSW01_17470 0.12 -0.2
584,681 + CSW01_17470 0.12 +0.3
584,681 + CSW01_17470 0.12 -0.6
584,681 + CSW01_17470 0.12 -0.0
584,681 + CSW01_17470 0.12 +0.2
584,689 - CSW01_17470 0.14 +0.1
584,689 - CSW01_17470 0.14 +0.1
584,689 - CSW01_17470 0.14 -0.1
584,689 - CSW01_17470 0.14 +0.3
584,689 - CSW01_17470 0.14 -0.0
584,689 - CSW01_17470 0.14 +0.0
584,689 - CSW01_17470 0.14 -0.1
584,790 - CSW01_17470 0.37 -0.4
584,843 - CSW01_17470 0.49 +0.1
584,880 - CSW01_17470 0.57 +1.4
584,880 - CSW01_17470 0.57 -0.0
584,899 + CSW01_17470 0.62 +0.0
584,938 + CSW01_17470 0.71 -1.6
584,948 - CSW01_17470 0.73 -1.0
584,956 - CSW01_17470 0.75 -0.0
584,968 + CSW01_17470 0.77 +0.4
584,971 + CSW01_17470 0.78 -0.2
584,971 + CSW01_17470 0.78 +1.8
585,079 - +0.2
585,169 + -0.3
585,193 + +0.2
585,193 + +0.6
585,244 - -0.2
585,249 - +0.7
585,291 + +1.1
585,358 - +0.8
585,393 - CSW01_17475 0.11 +0.7
585,417 - CSW01_17475 0.13 +0.5
585,430 + CSW01_17475 0.14 +0.3
585,430 + CSW01_17475 0.14 +0.7
585,430 + CSW01_17475 0.14 +1.2
585,438 - CSW01_17475 0.14 +0.5
585,438 - CSW01_17475 0.14 -0.6
585,443 + CSW01_17475 0.15 -1.1
585,567 - CSW01_17475 0.23 +3.1
585,578 + CSW01_17475 0.24 -0.8
585,608 + CSW01_17475 0.26 +0.9
585,608 + CSW01_17475 0.26 +0.1
585,608 + CSW01_17475 0.26 -0.3
585,608 + CSW01_17475 0.26 +0.5
585,608 + CSW01_17475 0.26 -1.4
585,608 + CSW01_17475 0.26 +0.4
585,616 - CSW01_17475 0.27 +0.1
585,616 - CSW01_17475 0.27 +0.1
585,616 - CSW01_17475 0.27 +0.3
585,616 - CSW01_17475 0.27 +0.1
585,616 - CSW01_17475 0.27 +0.6
585,687 + CSW01_17475 0.32 +0.3
585,692 + CSW01_17475 0.32 +1.0
585,694 + CSW01_17475 0.32 +1.7
585,762 - CSW01_17475 0.37 +0.8
585,789 - CSW01_17475 0.39 -0.6
585,789 - CSW01_17475 0.39 -0.0
585,789 - CSW01_17475 0.39 +0.8
585,870 + CSW01_17475 0.44 +0.9
585,870 + CSW01_17475 0.44 -0.0
585,878 - CSW01_17475 0.45 +0.1
585,878 - CSW01_17475 0.45 +0.6
585,902 - CSW01_17475 0.47 +0.4
585,903 + CSW01_17475 0.47 +0.1
585,911 - CSW01_17475 0.47 -0.7
585,969 - CSW01_17475 0.51 +0.2
586,096 - CSW01_17475 0.60 +0.6
586,096 - CSW01_17475 0.60 +0.4
586,189 + CSW01_17475 0.66 -1.8
586,198 - CSW01_17475 0.67 -0.5
586,365 + CSW01_17475 0.79 -0.4
586,367 + CSW01_17475 0.79 +0.4
586,456 - CSW01_17475 0.85 +1.4
586,483 + CSW01_17475 0.87 +1.0
586,587 - +0.6
586,597 + -0.4
586,605 - +0.7
586,666 + +0.1
586,666 + -0.3
586,674 - +1.9
586,686 - -0.2
586,882 + -0.2
586,971 - +1.0
587,008 + -0.0
587,087 - CSW01_17480 0.12 +0.5
587,194 + CSW01_17480 0.22 -0.7
587,194 + CSW01_17480 0.22 -0.5
587,253 + CSW01_17480 0.28 +0.3
587,261 - CSW01_17480 0.29 -0.2
587,261 - CSW01_17480 0.29 +0.7
587,261 - CSW01_17480 0.29 +0.3
587,261 - CSW01_17480 0.29 +0.4
587,324 + CSW01_17480 0.35 -0.2
587,324 + CSW01_17480 0.35 +0.1
587,332 - CSW01_17480 0.36 -0.5
587,389 - CSW01_17480 0.42 -0.4
587,443 - CSW01_17480 0.47 +0.7
587,473 + CSW01_17480 0.50 +0.1
587,481 - CSW01_17480 0.51 +0.4
587,481 - CSW01_17480 0.51 +0.5

Or see this region's nucleotide sequence