Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17380

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17370 and CSW01_17375 are separated by 191 nucleotidesCSW01_17375 and CSW01_17380 are separated by 9 nucleotidesCSW01_17380 and CSW01_17385 overlap by 4 nucleotidesCSW01_17385 and CSW01_17390 are separated by 3 nucleotidesCSW01_17390 and CSW01_17395 are separated by 18 nucleotides CSW01_17370: CSW01_17370 - hypothetical protein, at 567,495 to 567,845 _17370 CSW01_17375: CSW01_17375 - SAM-dependent methyltransferase, at 568,037 to 568,762 _17375 CSW01_17380: CSW01_17380 - LysR family transcriptional regulator, at 568,772 to 569,713 _17380 CSW01_17385: CSW01_17385 - antibiotic biosynthesis monooxygenase, at 569,710 to 570,000 _17385 CSW01_17390: CSW01_17390 - oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB, at 570,004 to 570,657 _17390 CSW01_17395: CSW01_17395 - hypothetical protein, at 570,676 to 570,876 _17395 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 567.803 kb on - strand, within CSW01_17370at 567.876 kb on - strandat 568.075 kb on + strandat 568.131 kb on + strand, within CSW01_17375at 568.131 kb on + strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.243 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.290 kb on - strand, within CSW01_17375at 568.396 kb on - strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.468 kb on + strand, within CSW01_17375at 568.476 kb on - strand, within CSW01_17375at 568.546 kb on + strand, within CSW01_17375at 568.547 kb on - strand, within CSW01_17375at 568.551 kb on + strand, within CSW01_17375at 568.558 kb on + strand, within CSW01_17375at 568.582 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.688 kb on + strand, within CSW01_17375at 568.733 kb on + strandat 568.751 kb on - strandat 568.845 kb on + strandat 568.845 kb on + strandat 568.875 kb on + strand, within CSW01_17380at 569.003 kb on - strand, within CSW01_17380at 569.015 kb on - strand, within CSW01_17380at 569.051 kb on + strand, within CSW01_17380at 569.150 kb on - strand, within CSW01_17380at 569.258 kb on - strand, within CSW01_17380at 569.284 kb on + strand, within CSW01_17380at 569.299 kb on + strand, within CSW01_17380at 569.332 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.409 kb on + strand, within CSW01_17380at 569.417 kb on - strand, within CSW01_17380at 569.422 kb on + strand, within CSW01_17380at 569.426 kb on + strand, within CSW01_17380at 569.458 kb on - strand, within CSW01_17380at 569.515 kb on + strand, within CSW01_17380at 569.526 kb on - strand, within CSW01_17380at 569.667 kb on + strandat 569.918 kb on + strand, within CSW01_17385at 569.938 kb on - strand, within CSW01_17385at 569.972 kb on + strandat 570.091 kb on - strand, within CSW01_17390at 570.104 kb on - strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.106 kb on + strand, within CSW01_17390at 570.252 kb on - strand, within CSW01_17390at 570.378 kb on - strand, within CSW01_17390at 570.418 kb on - strand, within CSW01_17390at 570.465 kb on + strand, within CSW01_17390at 570.532 kb on + strand, within CSW01_17390at 570.556 kb on + strand, within CSW01_17390at 570.700 kb on - strand, within CSW01_17395

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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567,803 - CSW01_17370 0.88 +1.3
567,876 - -0.3
568,075 + +0.9
568,131 + CSW01_17375 0.13 +0.0
568,131 + CSW01_17375 0.13 +1.4
568,164 - CSW01_17375 0.17 -0.3
568,164 - CSW01_17375 0.17 -0.0
568,243 + CSW01_17375 0.28 +0.2
568,269 + CSW01_17375 0.32 -1.7
568,269 + CSW01_17375 0.32 +1.5
568,269 + CSW01_17375 0.32 -0.1
568,277 - CSW01_17375 0.33 +0.6
568,277 - CSW01_17375 0.33 -1.2
568,277 - CSW01_17375 0.33 +0.8
568,277 - CSW01_17375 0.33 +0.7
568,277 - CSW01_17375 0.33 +1.6
568,290 - CSW01_17375 0.35 +0.1
568,396 - CSW01_17375 0.49 +0.5
568,426 + CSW01_17375 0.54 -0.0
568,426 + CSW01_17375 0.54 +0.6
568,426 + CSW01_17375 0.54 +1.2
568,426 + CSW01_17375 0.54 +0.6
568,428 + CSW01_17375 0.54 -0.1
568,428 + CSW01_17375 0.54 +0.2
568,428 + CSW01_17375 0.54 -1.8
568,434 - CSW01_17375 0.55 +0.6
568,434 - CSW01_17375 0.55 -0.2
568,434 - CSW01_17375 0.55 -0.4
568,434 - CSW01_17375 0.55 -0.6
568,434 - CSW01_17375 0.55 +1.1
568,434 - CSW01_17375 0.55 -1.0
568,434 - CSW01_17375 0.55 -0.4
568,434 - CSW01_17375 0.55 +0.3
568,436 - CSW01_17375 0.55 +0.2
568,436 - CSW01_17375 0.55 -0.1
568,468 + CSW01_17375 0.59 +1.9
568,476 - CSW01_17375 0.60 +0.7
568,546 + CSW01_17375 0.70 -0.4
568,547 - CSW01_17375 0.70 +0.6
568,551 + CSW01_17375 0.71 -1.7
568,558 + CSW01_17375 0.72 +0.2
568,582 + CSW01_17375 0.75 +0.4
568,624 + CSW01_17375 0.81 +0.2
568,624 + CSW01_17375 0.81 -0.5
568,624 + CSW01_17375 0.81 +0.1
568,688 + CSW01_17375 0.90 -1.5
568,733 + +1.4
568,751 - +0.8
568,845 + +0.8
568,845 + +0.4
568,875 + CSW01_17380 0.11 -0.3
569,003 - CSW01_17380 0.25 -0.4
569,015 - CSW01_17380 0.26 +0.2
569,051 + CSW01_17380 0.30 -0.1
569,150 - CSW01_17380 0.40 -0.1
569,258 - CSW01_17380 0.52 +0.7
569,284 + CSW01_17380 0.54 +0.8
569,299 + CSW01_17380 0.56 +2.6
569,332 + CSW01_17380 0.59 +0.1
569,346 + CSW01_17380 0.61 +0.6
569,346 + CSW01_17380 0.61 -0.3
569,346 + CSW01_17380 0.61 -0.2
569,409 + CSW01_17380 0.68 -0.2
569,417 - CSW01_17380 0.68 +0.4
569,422 + CSW01_17380 0.69 +0.8
569,426 + CSW01_17380 0.69 +0.0
569,458 - CSW01_17380 0.73 +1.0
569,515 + CSW01_17380 0.79 +0.2
569,526 - CSW01_17380 0.80 -1.2
569,667 + +0.4
569,918 + CSW01_17385 0.71 +0.2
569,938 - CSW01_17385 0.78 -0.3
569,972 + +0.1
570,091 - CSW01_17390 0.13 -0.5
570,104 - CSW01_17390 0.15 +0.0
570,106 + CSW01_17390 0.16 +0.5
570,106 + CSW01_17390 0.16 +0.2
570,106 + CSW01_17390 0.16 -0.2
570,252 - CSW01_17390 0.38 +0.5
570,378 - CSW01_17390 0.57 +0.2
570,418 - CSW01_17390 0.63 -0.6
570,465 + CSW01_17390 0.70 +0.4
570,532 + CSW01_17390 0.81 -0.1
570,556 + CSW01_17390 0.84 +0.6
570,700 - CSW01_17395 0.12 +0.1

Or see this region's nucleotide sequence