Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17295

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17285 and CSW01_17290 are separated by 92 nucleotidesCSW01_17290 and CSW01_17295 are separated by 151 nucleotidesCSW01_17295 and CSW01_17300 are separated by 2 nucleotidesCSW01_17300 and CSW01_17305 are separated by 183 nucleotides CSW01_17285: CSW01_17285 - peptide-methionine (R)-S-oxide reductase, at 548,136 to 549,320 _17285 CSW01_17290: CSW01_17290 - GTP cyclohydrolase I FolE, at 549,413 to 550,066 _17290 CSW01_17295: CSW01_17295 - molybdopterin molybdotransferase, at 550,218 to 551,453 _17295 CSW01_17300: CSW01_17300 - molybdopterin-synthase adenylyltransferase MoeB, at 551,456 to 552,220 _17300 CSW01_17305: CSW01_17305 - glyoxalase, at 552,404 to 552,772 _17305 Position (kb) 550 551 552Strain fitness (log2 ratio) -2 -1 0 1at 549.290 kb on - strandat 550.141 kb on - strandat 550.202 kb on + strandat 550.210 kb on - strandat 550.248 kb on - strandat 550.283 kb on + strandat 550.283 kb on + strandat 550.301 kb on - strandat 550.326 kb on + strandat 550.497 kb on + strand, within CSW01_17295at 550.589 kb on + strand, within CSW01_17295at 550.620 kb on - strand, within CSW01_17295at 550.661 kb on + strand, within CSW01_17295at 550.729 kb on + strand, within CSW01_17295at 550.790 kb on + strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.798 kb on - strand, within CSW01_17295at 550.952 kb on - strand, within CSW01_17295at 551.066 kb on + strand, within CSW01_17295at 551.105 kb on + strand, within CSW01_17295at 551.115 kb on + strand, within CSW01_17295at 551.139 kb on + strand, within CSW01_17295at 551.147 kb on - strand, within CSW01_17295at 551.147 kb on - strand, within CSW01_17295at 551.231 kb on + strand, within CSW01_17295at 551.286 kb on - strand, within CSW01_17295at 551.332 kb on + strandat 551.376 kb on - strandat 551.432 kb on + strandat 551.437 kb on + strandat 551.437 kb on + strandat 551.440 kb on - strandat 551.440 kb on - strandat 551.440 kb on - strandat 551.445 kb on - strandat 551.450 kb on - strandat 551.489 kb on - strandat 551.544 kb on + strand, within CSW01_17300at 551.556 kb on + strand, within CSW01_17300at 551.569 kb on - strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.582 kb on + strand, within CSW01_17300at 551.590 kb on - strand, within CSW01_17300at 551.672 kb on - strand, within CSW01_17300at 551.673 kb on - strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.684 kb on + strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.692 kb on - strand, within CSW01_17300at 551.777 kb on + strand, within CSW01_17300at 551.786 kb on + strand, within CSW01_17300at 551.794 kb on - strand, within CSW01_17300at 551.834 kb on + strand, within CSW01_17300at 551.862 kb on + strand, within CSW01_17300at 551.870 kb on - strand, within CSW01_17300at 551.872 kb on + strand, within CSW01_17300at 551.955 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 551.974 kb on + strand, within CSW01_17300at 552.009 kb on - strand, within CSW01_17300at 552.019 kb on + strand, within CSW01_17300at 552.024 kb on + strand, within CSW01_17300at 552.027 kb on - strand, within CSW01_17300at 552.032 kb on - strand, within CSW01_17300at 552.043 kb on - strand, within CSW01_17300at 552.070 kb on + strand, within CSW01_17300at 552.079 kb on - strand, within CSW01_17300at 552.087 kb on + strand, within CSW01_17300at 552.114 kb on + strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.122 kb on - strand, within CSW01_17300at 552.310 kb on - strandat 552.355 kb on + strandat 552.361 kb on + strandat 552.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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549,290 - +0.1
550,141 - +0.3
550,202 + +0.7
550,210 - +0.9
550,248 - +0.1
550,283 + +0.1
550,283 + +0.6
550,301 - +0.3
550,326 + +0.0
550,497 + CSW01_17295 0.23 -0.4
550,589 + CSW01_17295 0.30 +0.4
550,620 - CSW01_17295 0.33 +0.3
550,661 + CSW01_17295 0.36 +0.4
550,729 + CSW01_17295 0.41 -2.0
550,790 + CSW01_17295 0.46 -0.5
550,798 - CSW01_17295 0.47 +0.3
550,798 - CSW01_17295 0.47 -0.3
550,798 - CSW01_17295 0.47 -1.0
550,952 - CSW01_17295 0.59 -0.2
551,066 + CSW01_17295 0.69 +0.1
551,105 + CSW01_17295 0.72 -0.1
551,115 + CSW01_17295 0.73 -0.3
551,139 + CSW01_17295 0.75 -0.7
551,147 - CSW01_17295 0.75 +0.6
551,147 - CSW01_17295 0.75 -0.2
551,231 + CSW01_17295 0.82 -0.8
551,286 - CSW01_17295 0.86 +0.1
551,332 + -0.5
551,376 - -0.3
551,432 + -0.2
551,437 + +1.0
551,437 + +0.6
551,440 - +0.2
551,440 - +0.1
551,440 - +1.6
551,445 - +0.2
551,450 - +0.2
551,489 - +0.4
551,544 + CSW01_17300 0.12 +0.8
551,556 + CSW01_17300 0.13 +1.4
551,569 - CSW01_17300 0.15 +0.5
551,582 + CSW01_17300 0.16 +1.6
551,582 + CSW01_17300 0.16 -1.5
551,582 + CSW01_17300 0.16 +0.6
551,590 - CSW01_17300 0.18 +0.1
551,672 - CSW01_17300 0.28 -0.1
551,673 - CSW01_17300 0.28 -0.1
551,684 + CSW01_17300 0.30 +0.2
551,684 + CSW01_17300 0.30 +0.8
551,684 + CSW01_17300 0.30 +0.1
551,684 + CSW01_17300 0.30 +0.3
551,692 - CSW01_17300 0.31 +1.5
551,692 - CSW01_17300 0.31 +0.5
551,692 - CSW01_17300 0.31 +0.8
551,777 + CSW01_17300 0.42 -0.4
551,786 + CSW01_17300 0.43 +0.0
551,794 - CSW01_17300 0.44 -0.7
551,834 + CSW01_17300 0.49 +0.9
551,862 + CSW01_17300 0.53 -0.5
551,870 - CSW01_17300 0.54 -2.2
551,872 + CSW01_17300 0.54 +1.0
551,955 + CSW01_17300 0.65 +0.8
551,974 + CSW01_17300 0.68 -0.0
551,974 + CSW01_17300 0.68 +0.3
552,009 - CSW01_17300 0.72 +0.5
552,019 + CSW01_17300 0.74 +0.5
552,024 + CSW01_17300 0.74 +1.7
552,027 - CSW01_17300 0.75 +0.4
552,032 - CSW01_17300 0.75 -0.4
552,043 - CSW01_17300 0.77 +0.1
552,070 + CSW01_17300 0.80 +0.4
552,079 - CSW01_17300 0.81 -0.5
552,087 + CSW01_17300 0.82 -0.3
552,114 + CSW01_17300 0.86 +0.5
552,122 - CSW01_17300 0.87 +0.4
552,122 - CSW01_17300 0.87 -0.5
552,310 - +0.0
552,355 + +0.5
552,361 + +0.2
552,409 - +1.5

Or see this region's nucleotide sequence