Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16595

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16585 and CSW01_16590 are separated by 170 nucleotidesCSW01_16590 and CSW01_16595 overlap by 1 nucleotidesCSW01_16595 and CSW01_16600 are separated by 2 nucleotidesCSW01_16600 and CSW01_16605 are separated by 74 nucleotidesCSW01_16605 and CSW01_16610 are separated by 192 nucleotides CSW01_16585: CSW01_16585 - acetyltransferase, at 415,785 to 416,102 _16585 CSW01_16590: CSW01_16590 - N-acetyltransferase, at 416,273 to 416,965 _16590 CSW01_16595: CSW01_16595 - type II toxin-antitoxin system death-on-curing family toxin, at 416,965 to 417,366 _16595 CSW01_16600: CSW01_16600 - DUF3265 domain-containing protein, at 417,369 to 417,479 _16600 CSW01_16605: CSW01_16605 - VOC family protein, at 417,554 to 417,967 _16605 CSW01_16610: CSW01_16610 - prevent-host-death family protein, at 418,160 to 418,432 _16610 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1at 416.759 kb on + strand, within CSW01_16590at 417.136 kb on + strand, within CSW01_16595at 417.144 kb on - strand, within CSW01_16595at 417.196 kb on + strand, within CSW01_16595at 417.196 kb on + strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.204 kb on - strand, within CSW01_16595at 417.282 kb on - strand, within CSW01_16595at 417.417 kb on + strand, within CSW01_16600at 417.481 kb on - strandat 418.264 kb on - strand, within CSW01_16610

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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416,759 + CSW01_16590 0.70 -0.1
417,136 + CSW01_16595 0.43 +1.1
417,144 - CSW01_16595 0.45 -2.5
417,196 + CSW01_16595 0.57 +1.3
417,196 + CSW01_16595 0.57 -0.8
417,204 - CSW01_16595 0.59 +0.4
417,204 - CSW01_16595 0.59 +0.1
417,204 - CSW01_16595 0.59 +0.5
417,282 - CSW01_16595 0.79 -0.7
417,417 + CSW01_16600 0.43 +0.4
417,481 - -0.3
418,264 - CSW01_16610 0.38 -0.7

Or see this region's nucleotide sequence