Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16550

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16520 and CSW01_16525 are separated by 119 nucleotidesCSW01_16525 and CSW01_16530 overlap by 25 nucleotidesCSW01_16530 and CSW01_16535 overlap by 84 nucleotidesCSW01_16535 and CSW01_16540 overlap by 23 nucleotidesCSW01_16540 and CSW01_16545 overlap by 52 nucleotidesCSW01_16545 and CSW01_16550 are separated by 29 nucleotidesCSW01_16550 and CSW01_16555 overlap by 84 nucleotidesCSW01_16555 and CSW01_16560 are separated by 98 nucleotidesCSW01_16560 and CSW01_16565 overlap by 14 nucleotidesCSW01_16565 and CSW01_16570 are separated by 136 nucleotides CSW01_16520: CSW01_16520 - hypothetical protein, at 411,529 to 411,933 _16520 CSW01_16525: CSW01_16525 - DUF1289 domain-containing protein, at 412,053 to 412,334 _16525 CSW01_16530: CSW01_16530 - DUF1196 domain-containing protein, at 412,310 to 412,468 _16530 CSW01_16535: CSW01_16535 - transcriptional regulator, at 412,385 to 412,522 _16535 CSW01_16540: CSW01_16540 - acetyltransferase, at 412,500 to 412,613 _16540 CSW01_16545: CSW01_16545 - DUF1289 domain-containing protein, at 412,562 to 412,789 _16545 CSW01_16550: CSW01_16550 - DUF1196 domain-containing protein, at 412,819 to 412,977 _16550 CSW01_16555: CSW01_16555 - transcriptional regulator, at 412,894 to 413,031 _16555 CSW01_16560: CSW01_16560 - toxin HigB-2, at 413,130 to 413,462 _16560 CSW01_16565: CSW01_16565 - transcriptional regulator, at 413,449 to 413,763 _16565 CSW01_16570: CSW01_16570 - N-acetyltransferase, at 413,900 to 414,334 _16570 Position (kb) 412 413Strain fitness (log2 ratio) -1 0 1at 413.047 kb on - strandat 413.083 kb on - strandat 413.196 kb on + strand, within CSW01_16560at 413.198 kb on + strand, within CSW01_16560at 413.198 kb on + strand, within CSW01_16560at 413.198 kb on + strand, within CSW01_16560at 413.198 kb on + strand, within CSW01_16560at 413.206 kb on - strand, within CSW01_16560at 413.207 kb on + strand, within CSW01_16560at 413.207 kb on + strand, within CSW01_16560at 413.207 kb on + strand, within CSW01_16560at 413.230 kb on + strand, within CSW01_16560at 413.238 kb on - strand, within CSW01_16560at 413.353 kb on - strand, within CSW01_16560

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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413,047 - -0.3
413,083 - -0.2
413,196 + CSW01_16560 0.20 -0.2
413,198 + CSW01_16560 0.20 -0.0
413,198 + CSW01_16560 0.20 -0.0
413,198 + CSW01_16560 0.20 +0.1
413,198 + CSW01_16560 0.20 -0.2
413,206 - CSW01_16560 0.23 +0.0
413,207 + CSW01_16560 0.23 +0.4
413,207 + CSW01_16560 0.23 -0.2
413,207 + CSW01_16560 0.23 +1.0
413,230 + CSW01_16560 0.30 -0.6
413,238 - CSW01_16560 0.32 +0.2
413,353 - CSW01_16560 0.67 +0.2

Or see this region's nucleotide sequence