Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14970

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14960 and CSW01_14965 are separated by 115 nucleotidesCSW01_14965 and CSW01_14970 are separated by 164 nucleotidesCSW01_14970 and CSW01_14975 are separated by 323 nucleotides CSW01_14960: CSW01_14960 - hypothetical protein, at 211,996 to 212,544 _14960 CSW01_14965: CSW01_14965 - hypothetical protein, at 212,660 to 213,037 _14965 CSW01_14970: CSW01_14970 - guanosine monophosphate reductase, at 213,202 to 214,245 _14970 CSW01_14975: CSW01_14975 - DNA cytosine methyltransferase, at 214,569 to 215,720 _14975 Position (kb) 213 214 215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 212.244 kb on - strand, within CSW01_14960at 212.248 kb on - strand, within CSW01_14960at 212.340 kb on + strand, within CSW01_14960at 212.363 kb on - strand, within CSW01_14960at 212.405 kb on + strand, within CSW01_14960at 212.408 kb on - strand, within CSW01_14960at 212.418 kb on - strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.562 kb on - strandat 212.613 kb on + strandat 212.760 kb on + strand, within CSW01_14965at 212.949 kb on - strand, within CSW01_14965at 212.982 kb on - strand, within CSW01_14965at 213.125 kb on + strandat 213.125 kb on + strandat 213.133 kb on - strandat 213.159 kb on + strandat 213.200 kb on - strandat 213.377 kb on + strand, within CSW01_14970at 213.387 kb on + strand, within CSW01_14970at 213.388 kb on + strand, within CSW01_14970at 213.393 kb on + strand, within CSW01_14970at 213.395 kb on - strand, within CSW01_14970at 213.401 kb on - strand, within CSW01_14970at 213.432 kb on + strand, within CSW01_14970at 213.433 kb on + strand, within CSW01_14970at 213.433 kb on + strand, within CSW01_14970at 213.440 kb on - strand, within CSW01_14970at 213.440 kb on - strand, within CSW01_14970at 213.489 kb on + strand, within CSW01_14970at 213.548 kb on + strand, within CSW01_14970at 213.597 kb on + strand, within CSW01_14970at 213.610 kb on - strand, within CSW01_14970at 213.675 kb on + strand, within CSW01_14970at 213.683 kb on - strand, within CSW01_14970at 213.701 kb on + strand, within CSW01_14970at 213.715 kb on + strand, within CSW01_14970at 213.756 kb on + strand, within CSW01_14970at 213.756 kb on - strand, within CSW01_14970at 213.788 kb on + strand, within CSW01_14970at 213.791 kb on - strand, within CSW01_14970at 213.805 kb on + strand, within CSW01_14970at 213.815 kb on - strand, within CSW01_14970at 213.833 kb on + strand, within CSW01_14970at 213.841 kb on - strand, within CSW01_14970at 213.900 kb on - strand, within CSW01_14970at 213.987 kb on - strand, within CSW01_14970at 214.104 kb on + strand, within CSW01_14970at 214.122 kb on - strand, within CSW01_14970at 214.152 kb on - strandat 214.346 kb on + strandat 214.556 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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212,244 - CSW01_14960 0.45 +0.6
212,248 - CSW01_14960 0.46 +0.2
212,340 + CSW01_14960 0.63 +0.1
212,363 - CSW01_14960 0.67 +0.8
212,405 + CSW01_14960 0.74 -0.4
212,408 - CSW01_14960 0.75 -0.2
212,418 - CSW01_14960 0.77 +0.3
212,443 + CSW01_14960 0.81 +0.4
212,443 + CSW01_14960 0.81 -0.1
212,443 + CSW01_14960 0.81 +0.1
212,443 + CSW01_14960 0.81 +0.5
212,443 + CSW01_14960 0.81 +0.1
212,443 + CSW01_14960 0.81 +1.7
212,451 - CSW01_14960 0.83 +0.4
212,451 - CSW01_14960 0.83 -0.1
212,451 - CSW01_14960 0.83 +0.5
212,451 - CSW01_14960 0.83 +0.2
212,562 - +0.1
212,613 + -3.6
212,760 + CSW01_14965 0.26 -0.1
212,949 - CSW01_14965 0.76 -0.5
212,982 - CSW01_14965 0.85 +0.1
213,125 + +0.2
213,125 + +0.1
213,133 - +0.3
213,159 + +0.2
213,200 - +0.2
213,377 + CSW01_14970 0.17 -0.6
213,387 + CSW01_14970 0.18 +0.5
213,388 + CSW01_14970 0.18 +0.0
213,393 + CSW01_14970 0.18 +0.1
213,395 - CSW01_14970 0.18 -0.1
213,401 - CSW01_14970 0.19 +1.0
213,432 + CSW01_14970 0.22 +1.8
213,433 + CSW01_14970 0.22 -0.6
213,433 + CSW01_14970 0.22 +1.2
213,440 - CSW01_14970 0.23 +0.2
213,440 - CSW01_14970 0.23 +0.8
213,489 + CSW01_14970 0.27 -0.2
213,548 + CSW01_14970 0.33 +0.6
213,597 + CSW01_14970 0.38 +0.3
213,610 - CSW01_14970 0.39 -0.1
213,675 + CSW01_14970 0.45 +0.1
213,683 - CSW01_14970 0.46 +0.7
213,701 + CSW01_14970 0.48 -0.2
213,715 + CSW01_14970 0.49 +0.3
213,756 + CSW01_14970 0.53 +1.1
213,756 - CSW01_14970 0.53 +0.3
213,788 + CSW01_14970 0.56 -0.4
213,791 - CSW01_14970 0.56 +1.6
213,805 + CSW01_14970 0.58 +0.5
213,815 - CSW01_14970 0.59 -0.1
213,833 + CSW01_14970 0.60 +0.2
213,841 - CSW01_14970 0.61 +0.2
213,900 - CSW01_14970 0.67 +0.3
213,987 - CSW01_14970 0.75 +0.6
214,104 + CSW01_14970 0.86 +1.6
214,122 - CSW01_14970 0.88 -0.4
214,152 - +0.4
214,346 + +0.4
214,556 - +0.5

Or see this region's nucleotide sequence