Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14800

Experiment: LB_Aerobic_18HR_ZN18B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14795 and CSW01_14800 are separated by 195 nucleotidesCSW01_14800 and CSW01_14805 are separated by 78 nucleotides CSW01_14795: CSW01_14795 - universal stress protein, at 176,053 to 176,994 _14795 CSW01_14800: CSW01_14800 - transposase, at 177,190 to 178,425 _14800 CSW01_14805: CSW01_14805 - tryptophanase, at 178,504 to 179,922 _14805 Position (kb) 177 178 179Strain fitness (log2 ratio) -1 0 1 2at 176.254 kb on + strand, within CSW01_14795at 176.270 kb on - strand, within CSW01_14795at 176.311 kb on - strand, within CSW01_14795at 176.438 kb on + strand, within CSW01_14795at 176.479 kb on + strand, within CSW01_14795at 176.614 kb on + strand, within CSW01_14795at 176.617 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.630 kb on - strand, within CSW01_14795at 176.637 kb on + strand, within CSW01_14795at 176.673 kb on + strand, within CSW01_14795at 176.783 kb on - strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.820 kb on - strand, within CSW01_14795at 176.821 kb on + strand, within CSW01_14795at 176.835 kb on + strand, within CSW01_14795at 176.843 kb on - strand, within CSW01_14795at 176.900 kb on + strandat 176.956 kb on + strandat 176.964 kb on - strandat 177.187 kb on + strandat 177.252 kb on + strandat 177.254 kb on + strandat 177.259 kb on + strandat 177.260 kb on - strandat 177.304 kb on + strandat 177.307 kb on - strandat 177.312 kb on - strandat 177.354 kb on + strand, within CSW01_14800at 177.356 kb on - strand, within CSW01_14800at 177.366 kb on + strand, within CSW01_14800at 177.372 kb on - strand, within CSW01_14800at 177.389 kb on + strand, within CSW01_14800at 177.397 kb on - strand, within CSW01_14800at 177.482 kb on + strand, within CSW01_14800at 177.488 kb on - strand, within CSW01_14800at 177.529 kb on + strand, within CSW01_14800at 177.529 kb on + strand, within CSW01_14800at 177.577 kb on + strand, within CSW01_14800at 177.868 kb on + strand, within CSW01_14800at 177.900 kb on + strand, within CSW01_14800at 177.949 kb on + strand, within CSW01_14800at 177.993 kb on - strand, within CSW01_14800at 178.049 kb on - strand, within CSW01_14800at 178.169 kb on - strand, within CSW01_14800at 178.193 kb on + strand, within CSW01_14800at 178.219 kb on - strand, within CSW01_14800at 178.279 kb on - strand, within CSW01_14800at 178.287 kb on + strand, within CSW01_14800at 178.287 kb on + strand, within CSW01_14800at 178.295 kb on - strand, within CSW01_14800at 178.319 kb on + strandat 178.384 kb on - strandat 178.564 kb on + strandat 178.564 kb on + strandat 178.571 kb on + strandat 178.579 kb on - strandat 178.677 kb on - strand, within CSW01_14805at 178.743 kb on - strand, within CSW01_14805at 178.783 kb on + strand, within CSW01_14805at 178.783 kb on + strand, within CSW01_14805at 178.824 kb on - strand, within CSW01_14805at 178.892 kb on - strand, within CSW01_14805at 178.913 kb on - strand, within CSW01_14805at 178.954 kb on + strand, within CSW01_14805at 179.007 kb on - strand, within CSW01_14805at 179.048 kb on + strand, within CSW01_14805at 179.083 kb on + strand, within CSW01_14805at 179.083 kb on + strand, within CSW01_14805at 179.135 kb on - strand, within CSW01_14805at 179.167 kb on - strand, within CSW01_14805at 179.194 kb on + strand, within CSW01_14805at 179.288 kb on + strand, within CSW01_14805at 179.337 kb on - strand, within CSW01_14805at 179.375 kb on + strand, within CSW01_14805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
remove
176,254 + CSW01_14795 0.21 +0.3
176,270 - CSW01_14795 0.23 -0.1
176,311 - CSW01_14795 0.27 -0.2
176,438 + CSW01_14795 0.41 +0.9
176,479 + CSW01_14795 0.45 -0.5
176,614 + CSW01_14795 0.60 -0.0
176,617 - CSW01_14795 0.60 +0.7
176,622 - CSW01_14795 0.60 -0.8
176,622 - CSW01_14795 0.60 -1.7
176,630 - CSW01_14795 0.61 +0.1
176,637 + CSW01_14795 0.62 -0.1
176,673 + CSW01_14795 0.66 -0.9
176,783 - CSW01_14795 0.77 +0.2
176,790 + CSW01_14795 0.78 -0.4
176,790 + CSW01_14795 0.78 +0.9
176,790 + CSW01_14795 0.78 -0.1
176,790 + CSW01_14795 0.78 +2.4
176,790 + CSW01_14795 0.78 -0.6
176,790 + CSW01_14795 0.78 +0.4
176,790 + CSW01_14795 0.78 +0.5
176,790 + CSW01_14795 0.78 +1.0
176,790 + CSW01_14795 0.78 -0.1
176,798 - CSW01_14795 0.79 +0.7
176,798 - CSW01_14795 0.79 -0.1
176,798 - CSW01_14795 0.79 +0.8
176,798 - CSW01_14795 0.79 +0.0
176,798 - CSW01_14795 0.79 +0.5
176,798 - CSW01_14795 0.79 +0.3
176,820 - CSW01_14795 0.81 +0.1
176,821 + CSW01_14795 0.82 +0.8
176,835 + CSW01_14795 0.83 +0.5
176,843 - CSW01_14795 0.84 -0.4
176,900 + +0.2
176,956 + -0.3
176,964 - -0.1
177,187 + +0.6
177,252 + +0.6
177,254 + -1.1
177,259 + +0.8
177,260 - +0.6
177,304 + +0.5
177,307 - +1.8
177,312 - +0.3
177,354 + CSW01_14800 0.13 +1.0
177,356 - CSW01_14800 0.13 +0.7
177,366 + CSW01_14800 0.14 +0.9
177,372 - CSW01_14800 0.15 -1.5
177,389 + CSW01_14800 0.16 -0.7
177,397 - CSW01_14800 0.17 +0.1
177,482 + CSW01_14800 0.24 +0.8
177,488 - CSW01_14800 0.24 +1.3
177,529 + CSW01_14800 0.27 +0.7
177,529 + CSW01_14800 0.27 -0.2
177,577 + CSW01_14800 0.31 +0.9
177,868 + CSW01_14800 0.55 +0.3
177,900 + CSW01_14800 0.57 +0.4
177,949 + CSW01_14800 0.61 -0.1
177,993 - CSW01_14800 0.65 +0.6
178,049 - CSW01_14800 0.69 +0.4
178,169 - CSW01_14800 0.79 +0.0
178,193 + CSW01_14800 0.81 +0.4
178,219 - CSW01_14800 0.83 +0.1
178,279 - CSW01_14800 0.88 -0.9
178,287 + CSW01_14800 0.89 +2.4
178,287 + CSW01_14800 0.89 +0.4
178,295 - CSW01_14800 0.89 +1.0
178,319 + +1.1
178,384 - -0.3
178,564 + +0.3
178,564 + +0.1
178,571 + -0.2
178,579 - +0.3
178,677 - CSW01_14805 0.12 -0.1
178,743 - CSW01_14805 0.17 -0.1
178,783 + CSW01_14805 0.20 +0.1
178,783 + CSW01_14805 0.20 +1.1
178,824 - CSW01_14805 0.23 +0.4
178,892 - CSW01_14805 0.27 +0.6
178,913 - CSW01_14805 0.29 +0.6
178,954 + CSW01_14805 0.32 +0.7
179,007 - CSW01_14805 0.35 -0.6
179,048 + CSW01_14805 0.38 +0.4
179,083 + CSW01_14805 0.41 -0.1
179,083 + CSW01_14805 0.41 +1.7
179,135 - CSW01_14805 0.44 +0.7
179,167 - CSW01_14805 0.47 -0.8
179,194 + CSW01_14805 0.49 +0.8
179,288 + CSW01_14805 0.55 -0.3
179,337 - CSW01_14805 0.59 -0.2
179,375 + CSW01_14805 0.61 +0.5

Or see this region's nucleotide sequence