Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14615

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14610 and CSW01_14615 are separated by 15 nucleotidesCSW01_14615 and CSW01_14620 are separated by 47 nucleotides CSW01_14610: CSW01_14610 - type VI secretion system protein TssA, at 131,043 to 132,452 _14610 CSW01_14615: CSW01_14615 - type VI secretion system membrane subunit TssM, at 132,468 to 136,013 _14615 CSW01_14620: CSW01_14620 - type VI secretion protein, at 136,061 to 137,326 _14620 Position (kb) 132 133 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2 3at 131.496 kb on + strand, within CSW01_14610at 131.544 kb on - strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.552 kb on + strand, within CSW01_14610at 131.559 kb on - strand, within CSW01_14610at 131.561 kb on + strand, within CSW01_14610at 131.562 kb on - strand, within CSW01_14610at 131.587 kb on + strand, within CSW01_14610at 131.587 kb on - strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.613 kb on + strand, within CSW01_14610at 131.621 kb on - strand, within CSW01_14610at 131.631 kb on - strand, within CSW01_14610at 131.644 kb on - strand, within CSW01_14610at 131.654 kb on + strand, within CSW01_14610at 131.662 kb on - strand, within CSW01_14610at 131.669 kb on + strand, within CSW01_14610at 131.671 kb on + strand, within CSW01_14610at 131.679 kb on - strand, within CSW01_14610at 131.706 kb on + strand, within CSW01_14610at 131.772 kb on + strand, within CSW01_14610at 131.782 kb on + strand, within CSW01_14610at 131.795 kb on + strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.800 kb on + strand, within CSW01_14610at 131.808 kb on - strand, within CSW01_14610at 131.873 kb on + strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.938 kb on - strand, within CSW01_14610at 132.004 kb on - strand, within CSW01_14610at 132.130 kb on + strand, within CSW01_14610at 132.140 kb on + strand, within CSW01_14610at 132.143 kb on - strand, within CSW01_14610at 132.174 kb on + strand, within CSW01_14610at 132.255 kb on + strand, within CSW01_14610at 132.255 kb on + strand, within CSW01_14610at 132.273 kb on - strand, within CSW01_14610at 132.307 kb on + strand, within CSW01_14610at 132.330 kb on - strandat 132.356 kb on + strandat 132.356 kb on + strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.515 kb on + strandat 132.597 kb on - strandat 132.597 kb on - strandat 132.628 kb on + strandat 132.629 kb on + strandat 132.667 kb on + strandat 132.675 kb on - strandat 132.760 kb on + strandat 132.781 kb on + strandat 132.808 kb on + strandat 132.920 kb on - strand, within CSW01_14615at 132.920 kb on - strand, within CSW01_14615at 133.018 kb on - strand, within CSW01_14615at 133.058 kb on + strand, within CSW01_14615at 133.200 kb on + strand, within CSW01_14615at 133.200 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.219 kb on + strand, within CSW01_14615at 133.219 kb on + strand, within CSW01_14615at 133.270 kb on + strand, within CSW01_14615at 133.270 kb on + strand, within CSW01_14615at 133.278 kb on - strand, within CSW01_14615at 133.288 kb on - strand, within CSW01_14615at 133.288 kb on - strand, within CSW01_14615at 133.303 kb on + strand, within CSW01_14615at 133.311 kb on - strand, within CSW01_14615at 133.311 kb on - strand, within CSW01_14615at 133.336 kb on - strand, within CSW01_14615at 133.347 kb on + strand, within CSW01_14615at 133.483 kb on + strand, within CSW01_14615at 133.518 kb on + strand, within CSW01_14615at 133.566 kb on + strand, within CSW01_14615at 133.645 kb on - strand, within CSW01_14615at 133.683 kb on + strand, within CSW01_14615at 133.683 kb on + strand, within CSW01_14615at 133.705 kb on - strand, within CSW01_14615at 133.923 kb on + strand, within CSW01_14615at 133.923 kb on + strand, within CSW01_14615at 133.923 kb on + strand, within CSW01_14615at 133.931 kb on - strand, within CSW01_14615at 133.931 kb on - strand, within CSW01_14615at 133.955 kb on + strand, within CSW01_14615at 133.955 kb on + strand, within CSW01_14615at 133.955 kb on + strand, within CSW01_14615at 133.958 kb on - strand, within CSW01_14615at 134.055 kb on + strand, within CSW01_14615at 134.063 kb on - strand, within CSW01_14615at 134.063 kb on - strand, within CSW01_14615at 134.071 kb on + strand, within CSW01_14615at 134.164 kb on - strand, within CSW01_14615at 134.170 kb on + strand, within CSW01_14615at 134.176 kb on - strand, within CSW01_14615at 134.176 kb on - strand, within CSW01_14615at 134.178 kb on - strand, within CSW01_14615at 134.197 kb on - strand, within CSW01_14615at 134.383 kb on - strand, within CSW01_14615at 134.388 kb on - strand, within CSW01_14615at 134.390 kb on + strand, within CSW01_14615at 134.390 kb on + strand, within CSW01_14615at 134.398 kb on - strand, within CSW01_14615at 134.456 kb on + strand, within CSW01_14615at 134.732 kb on + strand, within CSW01_14615at 134.757 kb on - strand, within CSW01_14615at 134.795 kb on + strand, within CSW01_14615at 134.839 kb on + strand, within CSW01_14615at 134.891 kb on + strand, within CSW01_14615at 134.898 kb on - strand, within CSW01_14615at 134.899 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.928 kb on - strand, within CSW01_14615at 134.932 kb on + strand, within CSW01_14615at 134.937 kb on + strand, within CSW01_14615at 134.939 kb on + strand, within CSW01_14615at 134.945 kb on - strand, within CSW01_14615at 134.945 kb on - strand, within CSW01_14615at 134.947 kb on - strand, within CSW01_14615at 134.949 kb on + strand, within CSW01_14615at 134.972 kb on - strand, within CSW01_14615at 135.098 kb on - strand, within CSW01_14615at 135.193 kb on - strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.194 kb on + strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.202 kb on - strand, within CSW01_14615at 135.208 kb on - strand, within CSW01_14615at 135.225 kb on - strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.232 kb on + strand, within CSW01_14615at 135.284 kb on + strand, within CSW01_14615at 135.347 kb on + strand, within CSW01_14615at 135.347 kb on + strand, within CSW01_14615at 135.385 kb on - strand, within CSW01_14615at 135.511 kb on - strand, within CSW01_14615at 135.526 kb on - strand, within CSW01_14615at 135.531 kb on - strand, within CSW01_14615at 135.639 kb on - strand, within CSW01_14615at 135.652 kb on - strand, within CSW01_14615at 135.706 kb on + strandat 135.714 kb on - strandat 135.714 kb on - strandat 135.734 kb on + strandat 135.742 kb on - strandat 135.742 kb on - strandat 135.774 kb on - strandat 135.778 kb on + strandat 135.803 kb on - strandat 135.947 kb on + strandat 135.985 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 135.995 kb on + strandat 136.003 kb on - strandat 136.003 kb on - strandat 136.009 kb on + strandat 136.073 kb on - strandat 136.121 kb on - strandat 136.131 kb on + strandat 136.131 kb on + strandat 136.131 kb on + strandat 136.139 kb on - strandat 136.139 kb on - strandat 136.139 kb on - strandat 136.310 kb on - strand, within CSW01_14620at 136.323 kb on + strand, within CSW01_14620at 136.328 kb on + strand, within CSW01_14620at 136.328 kb on + strand, within CSW01_14620at 136.331 kb on - strand, within CSW01_14620at 136.333 kb on + strand, within CSW01_14620at 136.336 kb on - strand, within CSW01_14620at 136.338 kb on + strand, within CSW01_14620at 136.358 kb on + strand, within CSW01_14620at 136.408 kb on + strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.474 kb on + strand, within CSW01_14620at 136.482 kb on - strand, within CSW01_14620at 136.500 kb on + strand, within CSW01_14620at 136.513 kb on - strand, within CSW01_14620at 136.521 kb on - strand, within CSW01_14620at 136.555 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.675 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.688 kb on - strand, within CSW01_14620at 136.703 kb on - strand, within CSW01_14620at 136.768 kb on + strand, within CSW01_14620at 136.776 kb on - strand, within CSW01_14620at 136.866 kb on - strand, within CSW01_14620at 136.983 kb on - strand, within CSW01_14620at 136.996 kb on - strand, within CSW01_14620at 136.997 kb on - strand, within CSW01_14620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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131,496 + CSW01_14610 0.32 +0.2
131,544 - CSW01_14610 0.36 +0.1
131,551 + CSW01_14610 0.36 -0.7
131,551 + CSW01_14610 0.36 -0.1
131,552 + CSW01_14610 0.36 +0.6
131,559 - CSW01_14610 0.37 -0.2
131,561 + CSW01_14610 0.37 +1.5
131,562 - CSW01_14610 0.37 +1.1
131,587 + CSW01_14610 0.39 +0.1
131,587 - CSW01_14610 0.39 +0.6
131,592 + CSW01_14610 0.39 -2.3
131,592 + CSW01_14610 0.39 -0.1
131,595 - CSW01_14610 0.39 +0.6
131,595 - CSW01_14610 0.39 +1.1
131,613 + CSW01_14610 0.40 +1.6
131,621 - CSW01_14610 0.41 -0.5
131,631 - CSW01_14610 0.42 -0.3
131,644 - CSW01_14610 0.43 +0.4
131,654 + CSW01_14610 0.43 +0.3
131,662 - CSW01_14610 0.44 -0.3
131,669 + CSW01_14610 0.44 +0.3
131,671 + CSW01_14610 0.45 +0.2
131,679 - CSW01_14610 0.45 +0.5
131,706 + CSW01_14610 0.47 +0.7
131,772 + CSW01_14610 0.52 +0.1
131,782 + CSW01_14610 0.52 +0.3
131,795 + CSW01_14610 0.53 +3.6
131,798 - CSW01_14610 0.54 +1.1
131,798 - CSW01_14610 0.54 +0.8
131,800 + CSW01_14610 0.54 +0.7
131,808 - CSW01_14610 0.54 +1.4
131,873 + CSW01_14610 0.59 +0.7
131,881 - CSW01_14610 0.59 +0.3
131,881 - CSW01_14610 0.59 -0.4
131,930 + CSW01_14610 0.63 +0.6
131,930 + CSW01_14610 0.63 -0.0
131,930 - CSW01_14610 0.63 -0.5
131,930 - CSW01_14610 0.63 -0.6
131,938 - CSW01_14610 0.63 -0.2
132,004 - CSW01_14610 0.68 +0.4
132,130 + CSW01_14610 0.77 -0.5
132,140 + CSW01_14610 0.78 +0.8
132,143 - CSW01_14610 0.78 +0.6
132,174 + CSW01_14610 0.80 -0.1
132,255 + CSW01_14610 0.86 -0.8
132,255 + CSW01_14610 0.86 +0.2
132,273 - CSW01_14610 0.87 +0.8
132,307 + CSW01_14610 0.90 +1.2
132,330 - -0.9
132,356 + +0.0
132,356 + -1.5
132,364 - +0.5
132,364 - -0.2
132,364 - +0.3
132,364 - +0.3
132,364 - +0.3
132,515 + -0.9
132,597 - +0.2
132,597 - -0.4
132,628 + +0.5
132,629 + -0.4
132,667 + -0.4
132,675 - +0.9
132,760 + -0.0
132,781 + -0.3
132,808 + +0.5
132,920 - CSW01_14615 0.13 -0.7
132,920 - CSW01_14615 0.13 -0.0
133,018 - CSW01_14615 0.16 +0.2
133,058 + CSW01_14615 0.17 +0.1
133,200 + CSW01_14615 0.21 +0.4
133,200 - CSW01_14615 0.21 +0.6
133,201 - CSW01_14615 0.21 +1.1
133,201 - CSW01_14615 0.21 +0.5
133,201 - CSW01_14615 0.21 -0.0
133,201 - CSW01_14615 0.21 +0.5
133,219 + CSW01_14615 0.21 +0.1
133,219 + CSW01_14615 0.21 +1.0
133,270 + CSW01_14615 0.23 +0.1
133,270 + CSW01_14615 0.23 +0.0
133,278 - CSW01_14615 0.23 +0.6
133,288 - CSW01_14615 0.23 +0.4
133,288 - CSW01_14615 0.23 -0.2
133,303 + CSW01_14615 0.24 +0.5
133,311 - CSW01_14615 0.24 +1.2
133,311 - CSW01_14615 0.24 -0.9
133,336 - CSW01_14615 0.24 +0.6
133,347 + CSW01_14615 0.25 -0.0
133,483 + CSW01_14615 0.29 +0.0
133,518 + CSW01_14615 0.30 +0.4
133,566 + CSW01_14615 0.31 -0.5
133,645 - CSW01_14615 0.33 -0.1
133,683 + CSW01_14615 0.34 +0.1
133,683 + CSW01_14615 0.34 -0.9
133,705 - CSW01_14615 0.35 -0.1
133,923 + CSW01_14615 0.41 -0.2
133,923 + CSW01_14615 0.41 +0.1
133,923 + CSW01_14615 0.41 -0.2
133,931 - CSW01_14615 0.41 +0.8
133,931 - CSW01_14615 0.41 +2.5
133,955 + CSW01_14615 0.42 +0.2
133,955 + CSW01_14615 0.42 +0.5
133,955 + CSW01_14615 0.42 -0.3
133,958 - CSW01_14615 0.42 +0.6
134,055 + CSW01_14615 0.45 -0.1
134,063 - CSW01_14615 0.45 +1.0
134,063 - CSW01_14615 0.45 -0.7
134,071 + CSW01_14615 0.45 +0.6
134,164 - CSW01_14615 0.48 +0.1
134,170 + CSW01_14615 0.48 +0.4
134,176 - CSW01_14615 0.48 +0.2
134,176 - CSW01_14615 0.48 +0.2
134,178 - CSW01_14615 0.48 +1.2
134,197 - CSW01_14615 0.49 -0.8
134,383 - CSW01_14615 0.54 +0.7
134,388 - CSW01_14615 0.54 +0.2
134,390 + CSW01_14615 0.54 -0.1
134,390 + CSW01_14615 0.54 +0.8
134,398 - CSW01_14615 0.54 +0.6
134,456 + CSW01_14615 0.56 +0.2
134,732 + CSW01_14615 0.64 +0.5
134,757 - CSW01_14615 0.65 +0.5
134,795 + CSW01_14615 0.66 +0.2
134,839 + CSW01_14615 0.67 +0.1
134,891 + CSW01_14615 0.68 +1.1
134,898 - CSW01_14615 0.69 -0.9
134,899 - CSW01_14615 0.69 -1.0
134,928 - CSW01_14615 0.69 +0.1
134,928 - CSW01_14615 0.69 -0.3
134,928 - CSW01_14615 0.69 -0.4
134,928 - CSW01_14615 0.69 -0.6
134,928 - CSW01_14615 0.69 +0.4
134,928 - CSW01_14615 0.69 +1.7
134,932 + CSW01_14615 0.69 +0.4
134,937 + CSW01_14615 0.70 +0.7
134,939 + CSW01_14615 0.70 -0.4
134,945 - CSW01_14615 0.70 -0.5
134,945 - CSW01_14615 0.70 +0.4
134,947 - CSW01_14615 0.70 +0.7
134,949 + CSW01_14615 0.70 +0.6
134,972 - CSW01_14615 0.71 +0.1
135,098 - CSW01_14615 0.74 +0.4
135,193 - CSW01_14615 0.77 -0.1
135,194 + CSW01_14615 0.77 +0.5
135,194 + CSW01_14615 0.77 +0.2
135,194 + CSW01_14615 0.77 -1.6
135,194 + CSW01_14615 0.77 -0.3
135,194 + CSW01_14615 0.77 -1.2
135,194 + CSW01_14615 0.77 -0.1
135,194 + CSW01_14615 0.77 +0.3
135,194 + CSW01_14615 0.77 -0.6
135,194 + CSW01_14615 0.77 +0.4
135,194 + CSW01_14615 0.77 -0.1
135,202 - CSW01_14615 0.77 +1.0
135,202 - CSW01_14615 0.77 -0.9
135,202 - CSW01_14615 0.77 +1.8
135,208 - CSW01_14615 0.77 +0.3
135,225 - CSW01_14615 0.78 -0.7
135,232 + CSW01_14615 0.78 +0.7
135,232 + CSW01_14615 0.78 +0.6
135,232 + CSW01_14615 0.78 +0.5
135,284 + CSW01_14615 0.79 -0.1
135,347 + CSW01_14615 0.81 +0.2
135,347 + CSW01_14615 0.81 +0.3
135,385 - CSW01_14615 0.82 +0.9
135,511 - CSW01_14615 0.86 +0.1
135,526 - CSW01_14615 0.86 -0.2
135,531 - CSW01_14615 0.86 +0.2
135,639 - CSW01_14615 0.89 -0.1
135,652 - CSW01_14615 0.90 -0.0
135,706 + -0.1
135,714 - +0.5
135,714 - +0.8
135,734 + +0.4
135,742 - +0.5
135,742 - +0.0
135,774 - -0.4
135,778 + -0.1
135,803 - +0.3
135,947 + -0.3
135,985 + -1.0
135,995 + -0.8
135,995 + +0.1
135,995 + -0.0
135,995 + -0.5
136,003 - -0.1
136,003 - +0.7
136,009 + +0.6
136,073 - -0.3
136,121 - +0.8
136,131 + +0.9
136,131 + +1.3
136,131 + -0.8
136,139 - -1.1
136,139 - +0.6
136,139 - +0.4
136,310 - CSW01_14620 0.20 -0.0
136,323 + CSW01_14620 0.21 +0.5
136,328 + CSW01_14620 0.21 +0.8
136,328 + CSW01_14620 0.21 -0.1
136,331 - CSW01_14620 0.21 +0.9
136,333 + CSW01_14620 0.21 -0.6
136,336 - CSW01_14620 0.22 -0.0
136,338 + CSW01_14620 0.22 -0.3
136,358 + CSW01_14620 0.23 +0.3
136,408 + CSW01_14620 0.27 +0.0
136,421 - CSW01_14620 0.28 -0.6
136,421 - CSW01_14620 0.28 +0.4
136,474 + CSW01_14620 0.33 +0.5
136,482 - CSW01_14620 0.33 -0.1
136,500 + CSW01_14620 0.35 +0.1
136,513 - CSW01_14620 0.36 +0.2
136,521 - CSW01_14620 0.36 -0.3
136,555 + CSW01_14620 0.39 +2.1
136,560 + CSW01_14620 0.39 +0.3
136,560 + CSW01_14620 0.39 +0.8
136,560 + CSW01_14620 0.39 +0.5
136,560 + CSW01_14620 0.39 -0.5
136,675 + CSW01_14620 0.48 +1.7
136,680 + CSW01_14620 0.49 +0.2
136,680 + CSW01_14620 0.49 +0.4
136,688 - CSW01_14620 0.50 -0.1
136,703 - CSW01_14620 0.51 +2.4
136,768 + CSW01_14620 0.56 -0.5
136,776 - CSW01_14620 0.56 -0.4
136,866 - CSW01_14620 0.64 +0.1
136,983 - CSW01_14620 0.73 +0.4
136,996 - CSW01_14620 0.74 +0.1
136,997 - CSW01_14620 0.74 -0.8

Or see this region's nucleotide sequence