Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14325

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14320 and CSW01_14325 are separated by 8 nucleotidesCSW01_14325 and CSW01_14330 are separated by 85 nucleotidesCSW01_14330 and CSW01_14335 are separated by 529 nucleotides CSW01_14320: CSW01_14320 - deoxyribodipyrimidine photo-lyase, at 64,101 to 65,510 _14320 CSW01_14325: CSW01_14325 - peptidase, at 65,519 to 66,439 _14325 CSW01_14330: CSW01_14330 - hypothetical protein, at 66,525 to 66,773 _14330 CSW01_14335: CSW01_14335 - ATP-dependent helicase, at 67,303 to 68,661 _14335 Position (kb) 65 66 67Strain fitness (log2 ratio) -1 0 1 2at 64.519 kb on + strand, within CSW01_14320at 64.554 kb on + strand, within CSW01_14320at 64.564 kb on - strand, within CSW01_14320at 64.576 kb on + strand, within CSW01_14320at 64.588 kb on - strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.699 kb on - strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.717 kb on + strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.774 kb on - strand, within CSW01_14320at 64.898 kb on + strand, within CSW01_14320at 64.906 kb on + strand, within CSW01_14320at 64.937 kb on - strand, within CSW01_14320at 64.939 kb on - strand, within CSW01_14320at 64.977 kb on - strand, within CSW01_14320at 65.050 kb on - strand, within CSW01_14320at 65.058 kb on + strand, within CSW01_14320at 65.136 kb on + strand, within CSW01_14320at 65.174 kb on - strand, within CSW01_14320at 65.186 kb on - strand, within CSW01_14320at 65.188 kb on + strand, within CSW01_14320at 65.191 kb on - strand, within CSW01_14320at 65.195 kb on + strand, within CSW01_14320at 65.275 kb on + strand, within CSW01_14320at 65.410 kb on - strandat 65.410 kb on - strandat 65.410 kb on - strandat 65.410 kb on - strandat 65.411 kb on - strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.432 kb on + strandat 65.438 kb on - strandat 65.440 kb on - strandat 65.440 kb on - strandat 65.440 kb on - strandat 65.479 kb on + strandat 65.479 kb on + strandat 65.479 kb on + strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.487 kb on - strandat 65.489 kb on + strandat 65.489 kb on + strandat 65.497 kb on - strandat 65.497 kb on - strandat 65.613 kb on - strand, within CSW01_14325at 65.696 kb on + strand, within CSW01_14325at 65.726 kb on - strand, within CSW01_14325at 65.804 kb on + strand, within CSW01_14325at 65.813 kb on - strand, within CSW01_14325at 65.819 kb on - strand, within CSW01_14325at 65.866 kb on - strand, within CSW01_14325at 65.901 kb on + strand, within CSW01_14325at 65.977 kb on + strand, within CSW01_14325at 66.060 kb on - strand, within CSW01_14325at 66.121 kb on + strand, within CSW01_14325at 66.217 kb on + strand, within CSW01_14325at 66.317 kb on + strand, within CSW01_14325at 66.416 kb on - strandat 66.418 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.532 kb on + strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.540 kb on - strandat 66.699 kb on - strand, within CSW01_14330at 66.710 kb on - strand, within CSW01_14330at 66.788 kb on - strandat 66.788 kb on - strandat 66.811 kb on + strandat 66.819 kb on - strandat 66.819 kb on - strandat 66.819 kb on - strandat 66.819 kb on - strandat 66.819 kb on - strandat 67.087 kb on - strandat 67.099 kb on - strandat 67.101 kb on + strandat 67.152 kb on - strandat 67.226 kb on + strandat 67.227 kb on + strandat 67.232 kb on - strandat 67.236 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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64,519 + CSW01_14320 0.30 -0.9
64,554 + CSW01_14320 0.32 +0.1
64,564 - CSW01_14320 0.33 -0.3
64,576 + CSW01_14320 0.34 +0.8
64,588 - CSW01_14320 0.35 -0.3
64,682 + CSW01_14320 0.41 +0.1
64,682 + CSW01_14320 0.41 +0.3
64,690 - CSW01_14320 0.42 -0.3
64,690 - CSW01_14320 0.42 +0.5
64,699 - CSW01_14320 0.42 +0.4
64,715 + CSW01_14320 0.44 +0.3
64,715 + CSW01_14320 0.44 -0.0
64,715 + CSW01_14320 0.44 -0.3
64,715 + CSW01_14320 0.44 +1.6
64,717 + CSW01_14320 0.44 +1.2
64,723 - CSW01_14320 0.44 +2.0
64,723 - CSW01_14320 0.44 +0.8
64,723 - CSW01_14320 0.44 +0.3
64,723 - CSW01_14320 0.44 +0.3
64,774 - CSW01_14320 0.48 +0.7
64,898 + CSW01_14320 0.57 +0.6
64,906 + CSW01_14320 0.57 +0.0
64,937 - CSW01_14320 0.59 +0.7
64,939 - CSW01_14320 0.59 +1.7
64,977 - CSW01_14320 0.62 +2.7
65,050 - CSW01_14320 0.67 +0.2
65,058 + CSW01_14320 0.68 +0.1
65,136 + CSW01_14320 0.73 -0.3
65,174 - CSW01_14320 0.76 -0.3
65,186 - CSW01_14320 0.77 +1.2
65,188 + CSW01_14320 0.77 +0.6
65,191 - CSW01_14320 0.77 +0.2
65,195 + CSW01_14320 0.78 +0.2
65,275 + CSW01_14320 0.83 -0.3
65,410 - +0.3
65,410 - -0.4
65,410 - -0.1
65,410 - -0.1
65,411 - -0.0
65,432 + +1.3
65,432 + +0.5
65,432 + +0.4
65,432 + -0.8
65,432 + -0.4
65,432 + +0.0
65,438 - +1.0
65,440 - -0.0
65,440 - -0.4
65,440 - +0.4
65,479 + -0.1
65,479 + +0.8
65,479 + -0.3
65,487 - -0.2
65,487 - -0.3
65,487 - -0.2
65,487 - +0.1
65,489 + -0.2
65,489 + -0.0
65,497 - -0.6
65,497 - -1.5
65,613 - CSW01_14325 0.10 +0.6
65,696 + CSW01_14325 0.19 +0.4
65,726 - CSW01_14325 0.22 -0.1
65,804 + CSW01_14325 0.31 +0.6
65,813 - CSW01_14325 0.32 +0.4
65,819 - CSW01_14325 0.33 +0.9
65,866 - CSW01_14325 0.38 +0.1
65,901 + CSW01_14325 0.41 +0.6
65,977 + CSW01_14325 0.50 +0.6
66,060 - CSW01_14325 0.59 -0.2
66,121 + CSW01_14325 0.65 -0.5
66,217 + CSW01_14325 0.76 -0.7
66,317 + CSW01_14325 0.87 +0.9
66,416 - +1.2
66,418 + +0.2
66,532 + +1.3
66,532 + +1.0
66,532 + -1.1
66,532 + +1.2
66,532 + -0.9
66,532 + +1.1
66,532 + -0.1
66,532 + +0.5
66,532 + -0.6
66,532 + -0.2
66,532 + +1.0
66,532 + +0.6
66,532 + +0.3
66,532 + +0.5
66,532 + -0.3
66,532 + +0.6
66,532 + -0.9
66,532 + -0.5
66,532 + +0.4
66,532 + +0.9
66,540 - +0.7
66,540 - +0.3
66,540 - +0.8
66,540 - +0.9
66,540 - -0.4
66,540 - +0.5
66,540 - +0.3
66,540 - +0.1
66,540 - +0.1
66,699 - CSW01_14330 0.70 -0.1
66,710 - CSW01_14330 0.74 +0.8
66,788 - +0.8
66,788 - +0.2
66,811 + +0.4
66,819 - +0.5
66,819 - -0.3
66,819 - +0.4
66,819 - +0.7
66,819 - +0.4
67,087 - +2.4
67,099 - +0.7
67,101 + -0.1
67,152 - +0.8
67,226 + +1.0
67,227 + +1.4
67,232 - -0.4
67,236 + -0.4

Or see this region's nucleotide sequence