Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13140

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_13125 and CSW01_13130 are separated by 16 nucleotidesCSW01_13130 and CSW01_13135 overlap by 4 nucleotidesCSW01_13135 and CSW01_13140 are separated by 16 nucleotidesCSW01_13140 and CSW01_13145 are separated by 14 nucleotidesCSW01_13145 and CSW01_13150 are separated by 470 nucleotides CSW01_13125: CSW01_13125 - 50S ribosomal protein L2, at 2,793,488 to 2,794,312 _13125 CSW01_13130: CSW01_13130 - 50S ribosomal protein L23, at 2,794,329 to 2,794,631 _13130 CSW01_13135: CSW01_13135 - 50S ribosomal protein L4, at 2,794,628 to 2,795,230 _13135 CSW01_13140: CSW01_13140 - 50S ribosomal protein L3, at 2,795,247 to 2,795,876 _13140 CSW01_13145: CSW01_13145 - 30S ribosomal protein S10, at 2,795,891 to 2,796,202 _13145 CSW01_13150: CSW01_13150 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,796,673 to 2,797,416 _13150 Position (kb) 2795 2796Strain fitness (log2 ratio) -1 0 1at 2796.442 kb on - strandat 2796.562 kb on - strandat 2796.616 kb on - strandat 2796.683 kb on + strandat 2796.727 kb on - strandat 2796.743 kb on - strandat 2796.743 kb on - strandat 2796.868 kb on + strand, within CSW01_13150

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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2,796,442 - +0.8
2,796,562 - +0.8
2,796,616 - +0.4
2,796,683 + +0.4
2,796,727 - -0.8
2,796,743 - -0.6
2,796,743 - +0.1
2,796,868 + CSW01_13150 0.26 -0.8

Or see this region's nucleotide sequence