Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09270

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09260 and CSW01_09265 are separated by 40 nucleotidesCSW01_09265 and CSW01_09270 are separated by 106 nucleotidesCSW01_09270 and CSW01_09275 are separated by 61 nucleotidesCSW01_09275 and CSW01_09280 are separated by 31 nucleotides CSW01_09260: CSW01_09260 - peptidylprolyl isomerase, at 1,987,563 to 1,988,057 _09260 CSW01_09265: CSW01_09265 - UDP-2,3-diacylglucosamine diphosphatase, at 1,988,098 to 1,988,827 _09265 CSW01_09270: CSW01_09270 - EAL domain-containing protein, at 1,988,934 to 1,990,148 _09270 CSW01_09275: CSW01_09275 - hypothetical protein, at 1,990,210 to 1,990,665 _09275 CSW01_09280: CSW01_09280 - DUF2057 domain-containing protein, at 1,990,697 to 1,991,371 _09280 Position (kb) 1988 1989 1990 1991Strain fitness (log2 ratio) -1 0 1 2 3at 1988.052 kb on + strandat 1988.791 kb on - strandat 1989.095 kb on + strand, within CSW01_09270at 1989.095 kb on + strand, within CSW01_09270at 1989.103 kb on - strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.230 kb on + strand, within CSW01_09270at 1989.238 kb on - strand, within CSW01_09270at 1989.452 kb on + strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.508 kb on - strand, within CSW01_09270at 1989.508 kb on - strand, within CSW01_09270at 1989.565 kb on - strand, within CSW01_09270at 1989.641 kb on + strand, within CSW01_09270at 1989.699 kb on + strand, within CSW01_09270at 1989.704 kb on + strand, within CSW01_09270at 1989.709 kb on + strand, within CSW01_09270at 1989.717 kb on - strand, within CSW01_09270at 1989.717 kb on - strand, within CSW01_09270at 1989.840 kb on - strand, within CSW01_09270at 1989.899 kb on - strand, within CSW01_09270at 1989.972 kb on + strand, within CSW01_09270at 1989.972 kb on + strand, within CSW01_09270at 1989.980 kb on - strand, within CSW01_09270at 1989.980 kb on - strand, within CSW01_09270at 1990.018 kb on - strand, within CSW01_09270at 1990.025 kb on - strand, within CSW01_09270at 1990.062 kb on + strandat 1990.150 kb on - strandat 1990.244 kb on - strandat 1990.244 kb on - strandat 1990.280 kb on + strand, within CSW01_09275at 1990.288 kb on - strand, within CSW01_09275at 1990.299 kb on + strand, within CSW01_09275at 1990.345 kb on - strand, within CSW01_09275at 1990.387 kb on - strand, within CSW01_09275at 1990.531 kb on - strand, within CSW01_09275at 1990.531 kb on - strand, within CSW01_09275at 1990.669 kb on + strandat 1990.809 kb on - strand, within CSW01_09280at 1991.130 kb on + strand, within CSW01_09280at 1991.130 kb on + strand, within CSW01_09280at 1991.130 kb on + strand, within CSW01_09280at 1991.138 kb on - strand, within CSW01_09280at 1991.138 kb on - strand, within CSW01_09280

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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1,988,052 + -0.0
1,988,791 - +0.5
1,989,095 + CSW01_09270 0.13 +0.8
1,989,095 + CSW01_09270 0.13 +0.5
1,989,103 - CSW01_09270 0.14 +0.6
1,989,220 + CSW01_09270 0.24 +0.1
1,989,220 + CSW01_09270 0.24 +0.9
1,989,220 + CSW01_09270 0.24 +0.7
1,989,220 + CSW01_09270 0.24 +0.3
1,989,220 + CSW01_09270 0.24 +0.2
1,989,220 + CSW01_09270 0.24 +0.6
1,989,220 + CSW01_09270 0.24 +1.2
1,989,220 + CSW01_09270 0.24 +0.2
1,989,220 + CSW01_09270 0.24 -0.0
1,989,220 + CSW01_09270 0.24 +0.1
1,989,220 + CSW01_09270 0.24 +0.8
1,989,220 + CSW01_09270 0.24 +0.4
1,989,220 + CSW01_09270 0.24 +0.6
1,989,220 + CSW01_09270 0.24 -0.1
1,989,228 - CSW01_09270 0.24 +0.7
1,989,228 - CSW01_09270 0.24 +0.3
1,989,228 - CSW01_09270 0.24 +1.3
1,989,228 - CSW01_09270 0.24 +0.3
1,989,228 - CSW01_09270 0.24 -0.0
1,989,228 - CSW01_09270 0.24 +1.0
1,989,228 - CSW01_09270 0.24 +0.1
1,989,228 - CSW01_09270 0.24 +0.6
1,989,230 + CSW01_09270 0.24 +0.9
1,989,238 - CSW01_09270 0.25 -0.2
1,989,452 + CSW01_09270 0.43 +0.6
1,989,460 - CSW01_09270 0.43 +1.5
1,989,460 - CSW01_09270 0.43 +0.6
1,989,460 - CSW01_09270 0.43 +2.8
1,989,460 - CSW01_09270 0.43 +1.6
1,989,508 - CSW01_09270 0.47 +0.2
1,989,508 - CSW01_09270 0.47 +0.6
1,989,565 - CSW01_09270 0.52 +0.4
1,989,641 + CSW01_09270 0.58 +1.5
1,989,699 + CSW01_09270 0.63 +0.8
1,989,704 + CSW01_09270 0.63 +0.4
1,989,709 + CSW01_09270 0.64 +0.5
1,989,717 - CSW01_09270 0.64 -0.9
1,989,717 - CSW01_09270 0.64 +0.4
1,989,840 - CSW01_09270 0.75 -0.2
1,989,899 - CSW01_09270 0.79 +0.2
1,989,972 + CSW01_09270 0.85 +0.3
1,989,972 + CSW01_09270 0.85 +0.3
1,989,980 - CSW01_09270 0.86 -0.2
1,989,980 - CSW01_09270 0.86 +1.0
1,990,018 - CSW01_09270 0.89 +0.7
1,990,025 - CSW01_09270 0.90 +0.4
1,990,062 + +0.4
1,990,150 - +0.1
1,990,244 - +0.2
1,990,244 - +0.1
1,990,280 + CSW01_09275 0.15 -0.0
1,990,288 - CSW01_09275 0.17 -0.3
1,990,299 + CSW01_09275 0.20 +0.9
1,990,345 - CSW01_09275 0.30 +0.8
1,990,387 - CSW01_09275 0.39 +0.3
1,990,531 - CSW01_09275 0.70 +1.0
1,990,531 - CSW01_09275 0.70 -0.4
1,990,669 + -1.0
1,990,809 - CSW01_09280 0.17 -0.4
1,991,130 + CSW01_09280 0.64 +0.9
1,991,130 + CSW01_09280 0.64 +0.4
1,991,130 + CSW01_09280 0.64 -0.2
1,991,138 - CSW01_09280 0.65 -0.5
1,991,138 - CSW01_09280 0.65 +0.1

Or see this region's nucleotide sequence