Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08310

Experiment: LB_Aerobic_18HR_ZN18B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_18HR_ZN18B
1,780,554	+		CSW01_08305	0.46	+1.4
1,780,567	-		CSW01_08305	0.47	+0.1
1,780,622	+		CSW01_08305	0.50	+0.4
1,780,623	-		CSW01_08305	0.50	+0.3
1,780,652	+		CSW01_08305	0.52	+0.2
1,780,684	-		CSW01_08305	0.54	-0.1
1,780,718	-		CSW01_08305	0.56	+0.1
1,780,847	+		CSW01_08305	0.63	+0.4
1,780,847	+		CSW01_08305	0.63	+0.1
1,780,852	+		CSW01_08305	0.63	+0.1
1,780,912	-		CSW01_08305	0.67	-0.3
1,780,943	-		CSW01_08305	0.69	+1.8
1,780,948	-		CSW01_08305	0.69	+0.1
1,781,080	+		CSW01_08305	0.76	+0.7
1,781,081	-		CSW01_08305	0.76	-0.8
1,781,171	+		CSW01_08305	0.82	+1.7
1,781,179	-		CSW01_08305	0.82	-0.1
1,781,180	-		CSW01_08305	0.82	+0.4
1,781,252	+		CSW01_08305	0.86	+0.2
1,781,252	+		CSW01_08305	0.86	+0.3
1,781,252	+		CSW01_08305	0.86	+0.5
1,781,260	-		CSW01_08305	0.87	-0.4
1,781,270	-		CSW01_08305	0.87	+0.5
1,781,274	+		CSW01_08305	0.87	-0.1
1,781,282	-		CSW01_08305	0.88	+1.2
1,781,311	+		CSW01_08305	0.90	+0.8
1,781,339	+				+0.5
1,781,366	+				+0.3
1,781,366	+				-0.1
1,781,376	+				+0.6
1,781,376	+				+0.7
1,781,376	+				-1.8
1,781,376	+				-0.2
1,781,384	-				-0.1
1,781,384	-				+0.6
1,781,384	-				+0.2
1,781,495	+				-0.3
1,781,513	-				-0.3
1,781,515	+				+0.0
1,781,564	-				+0.7
1,781,817	-				+0.8
1,781,837	+				-0.6
1,781,845	-				+1.9
1,781,864	+		CSW01_08310	0.10	+0.4
1,781,864	+		CSW01_08310	0.10	-0.5
1,781,864	+		CSW01_08310	0.10	-0.1
1,781,864	+		CSW01_08310	0.10	+0.2
1,781,864	+		CSW01_08310	0.10	+0.3
1,781,865	+		CSW01_08310	0.10	+0.7
1,781,872	-		CSW01_08310	0.11	+1.1
1,781,872	-		CSW01_08310	0.11	-0.0
1,781,872	-		CSW01_08310	0.11	+0.3
1,781,872	-		CSW01_08310	0.11	-0.4
1,781,872	-		CSW01_08310	0.11	+0.8
1,781,940	+		CSW01_08310	0.13	+0.8
1,781,945	+		CSW01_08310	0.13	+0.6
1,781,953	-		CSW01_08310	0.13	-0.0
1,781,953	-		CSW01_08310	0.13	+1.1
1,782,052	+		CSW01_08310	0.16	+1.2
1,782,052	+		CSW01_08310	0.16	+0.8
1,782,052	+		CSW01_08310	0.16	-0.2
1,782,052	+		CSW01_08310	0.16	-0.2
1,782,052	+		CSW01_08310	0.16	+0.9
1,782,052	+		CSW01_08310	0.16	+2.0
1,782,060	-		CSW01_08310	0.16	+1.2
1,782,194	-		CSW01_08310	0.20	+0.2
1,782,224	-		CSW01_08310	0.21	+2.0
1,782,346	+		CSW01_08310	0.24	+1.2
1,782,512	+		CSW01_08310	0.29	+0.0
1,782,512	+		CSW01_08310	0.29	-0.9
1,782,512	+		CSW01_08310	0.29	+0.7
1,782,512	+		CSW01_08310	0.29	+1.1
1,782,520	-		CSW01_08310	0.29	+0.8
1,782,520	-		CSW01_08310	0.29	+0.3
1,782,520	-		CSW01_08310	0.29	-0.1
1,782,520	-		CSW01_08310	0.29	+0.2
1,782,520	-		CSW01_08310	0.29	+0.1
1,782,520	-		CSW01_08310	0.29	-0.6
1,782,520	-		CSW01_08310	0.29	+1.0
1,782,679	-		CSW01_08310	0.33	-0.6
1,782,721	+		CSW01_08310	0.35	+0.3
1,782,743	-		CSW01_08310	0.35	-0.1
1,782,800	-		CSW01_08310	0.37	+0.4
1,782,952	-		CSW01_08310	0.41	-0.0
1,782,964	-		CSW01_08310	0.42	+0.8
1,783,088	+		CSW01_08310	0.45	-0.1
1,783,121	-		CSW01_08310	0.46	+0.0
1,783,159	+		CSW01_08310	0.47	+0.8
1,783,159	+		CSW01_08310	0.47	-0.2
1,783,167	-		CSW01_08310	0.47	+0.0
1,783,167	-		CSW01_08310	0.47	+0.7
1,783,180	+		CSW01_08310	0.48	-0.7
1,783,197	-		CSW01_08310	0.48	+1.5
1,783,311	+		CSW01_08310	0.51	+0.6
1,783,324	+		CSW01_08310	0.52	+0.6
1,783,332	-		CSW01_08310	0.52	+0.4
1,783,379	+		CSW01_08310	0.53	-0.5
1,783,379	+		CSW01_08310	0.53	+0.6
1,783,379	+		CSW01_08310	0.53	+0.1
1,783,379	+		CSW01_08310	0.53	-0.2
1,783,379	+		CSW01_08310	0.53	+0.9
1,783,379	+		CSW01_08310	0.53	+1.1
1,783,387	-		CSW01_08310	0.53	-0.5
1,783,387	-		CSW01_08310	0.53	+1.2
1,783,387	-		CSW01_08310	0.53	-0.0
1,783,387	-		CSW01_08310	0.53	-0.2
1,783,389	+		CSW01_08310	0.54	+0.5
1,783,462	+		CSW01_08310	0.56	-0.4
1,783,465	-		CSW01_08310	0.56	-0.7
1,783,467	+		CSW01_08310	0.56	+0.5
1,783,467	+		CSW01_08310	0.56	-0.1
1,783,470	-		CSW01_08310	0.56	+0.5
1,783,475	+		CSW01_08310	0.56	+0.2
1,783,475	-		CSW01_08310	0.56	+0.5
1,783,475	-		CSW01_08310	0.56	-1.3
1,783,475	-		CSW01_08310	0.56	+0.1
1,783,475	-		CSW01_08310	0.56	+0.7
1,783,475	-		CSW01_08310	0.56	+0.9
1,783,475	-		CSW01_08310	0.56	+0.9
1,783,486	+		CSW01_08310	0.56	+0.3
1,783,494	-		CSW01_08310	0.57	+0.1
1,783,494	-		CSW01_08310	0.57	+0.1
1,783,496	+		CSW01_08310	0.57	+0.3
1,783,522	+		CSW01_08310	0.57	+0.6
1,783,522	+		CSW01_08310	0.57	+0.7
1,783,530	-		CSW01_08310	0.58	+0.4
1,783,530	-		CSW01_08310	0.58	+0.2
1,783,530	-		CSW01_08310	0.58	-0.3
1,783,530	-		CSW01_08310	0.58	-0.8
1,783,534	+		CSW01_08310	0.58	+0.5
1,783,534	+		CSW01_08310	0.58	+0.9
1,783,534	+		CSW01_08310	0.58	+0.4
1,783,542	-		CSW01_08310	0.58	-0.5
1,783,542	-		CSW01_08310	0.58	+0.4
1,783,548	-		CSW01_08310	0.58	+0.3
1,783,580	+		CSW01_08310	0.59	-0.5
1,783,580	+		CSW01_08310	0.59	-0.0
1,783,625	+		CSW01_08310	0.60	+0.8
1,783,627	+		CSW01_08310	0.60	-0.7
1,783,633	-		CSW01_08310	0.60	-1.3
1,783,633	-		CSW01_08310	0.60	+0.7
1,783,633	-		CSW01_08310	0.60	-0.2
1,783,633	-		CSW01_08310	0.60	+0.2
1,783,633	-		CSW01_08310	0.60	+0.0
1,783,635	+		CSW01_08310	0.61	+0.4
1,783,635	+		CSW01_08310	0.61	+0.5
1,783,635	+		CSW01_08310	0.61	-0.0
1,783,635	+		CSW01_08310	0.61	+0.4
1,783,635	+		CSW01_08310	0.61	-0.4
1,783,643	-		CSW01_08310	0.61	+0.7
1,783,643	-		CSW01_08310	0.61	-0.0
1,783,643	-		CSW01_08310	0.61	+0.4
1,783,643	-		CSW01_08310	0.61	-0.3
1,783,668	-		CSW01_08310	0.61	+1.1
1,783,678	-		CSW01_08310	0.62	+0.3
1,783,678	-		CSW01_08310	0.62	+0.2
1,783,678	-		CSW01_08310	0.62	-0.1
1,783,678	-		CSW01_08310	0.62	-0.9
1,783,679	-		CSW01_08310	0.62	-1.0
1,783,692	-		CSW01_08310	0.62	+0.0
1,783,737	+		CSW01_08310	0.63	+0.1
1,783,839	-		CSW01_08310	0.66	+1.3
1,783,853	+		CSW01_08310	0.67	+0.6
1,783,859	+		CSW01_08310	0.67	+0.1
1,783,864	+		CSW01_08310	0.67	-0.1
1,783,871	+		CSW01_08310	0.67	+0.4
1,783,929	+		CSW01_08310	0.69	+0.5
1,783,937	-		CSW01_08310	0.69	-0.2
1,783,937	-		CSW01_08310	0.69	+0.4
1,783,974	+		CSW01_08310	0.70	+0.6
1,783,974	+		CSW01_08310	0.70	-0.2
1,783,974	+		CSW01_08310	0.70	-0.0
1,783,974	+		CSW01_08310	0.70	+0.7
1,783,974	+		CSW01_08310	0.70	+0.2
1,783,982	-		CSW01_08310	0.70	+1.2
1,783,982	-		CSW01_08310	0.70	-0.3
1,783,982	-		CSW01_08310	0.70	+0.3
1,783,982	-		CSW01_08310	0.70	-0.2
1,783,982	-		CSW01_08310	0.70	-0.1
1,783,982	-		CSW01_08310	0.70	+0.4
1,783,982	-		CSW01_08310	0.70	+0.8
1,783,982	-		CSW01_08310	0.70	+0.5
1,783,982	-		CSW01_08310	0.70	+0.0
1,783,982	-		CSW01_08310	0.70	+1.4
1,783,982	-		CSW01_08310	0.70	+0.5
1,783,982	-		CSW01_08310	0.70	+0.0
1,783,982	-		CSW01_08310	0.70	+1.2
1,783,982	-		CSW01_08310	0.70	+0.1
1,784,026	-		CSW01_08310	0.72	+0.4
1,784,037	+		CSW01_08310	0.72	-0.6
1,784,101	+		CSW01_08310	0.74	+0.3
1,784,105	+		CSW01_08310	0.74	+1.1
1,784,105	+		CSW01_08310	0.74	+1.2
1,784,115	-		CSW01_08310	0.74	+0.6
1,784,134	-		CSW01_08310	0.75	+0.7
1,784,155	+		CSW01_08310	0.75	-1.1
1,784,194	-		CSW01_08310	0.76	-0.9
1,784,256	-		CSW01_08310	0.78	+0.1
1,784,414	-		CSW01_08310	0.83	+0.3
1,784,444	+		CSW01_08310	0.83	+0.2
1,784,444	+		CSW01_08310	0.83	-0.7
1,784,452	-		CSW01_08310	0.84	+1.7
1,784,452	-		CSW01_08310	0.84	+0.4
1,784,452	-		CSW01_08310	0.84	+1.1
1,784,466	+		CSW01_08310	0.84	+0.6
1,784,471	+		CSW01_08310	0.84	-0.0
1,784,471	+		CSW01_08310	0.84	+0.1
1,784,478	+		CSW01_08310	0.84	+0.6
1,784,478	+		CSW01_08310	0.84	+0.4
1,784,479	-		CSW01_08310	0.84	-0.2
1,784,479	-		CSW01_08310	0.84	-0.7
1,784,486	-		CSW01_08310	0.85	-0.4
1,784,511	-		CSW01_08310	0.85	+0.6
1,784,521	-		CSW01_08310	0.86	+0.6
1,784,537	+		CSW01_08310	0.86	-0.2
1,784,543	+		CSW01_08310	0.86	+0.6
1,784,543	+		CSW01_08310	0.86	-0.5
1,784,544	-		CSW01_08310	0.86	-1.8
1,784,551	-		CSW01_08310	0.86	+1.5
1,784,560	+		CSW01_08310	0.87	+0.3
1,784,568	+		CSW01_08310	0.87	-0.2
1,784,568	-		CSW01_08310	0.87	+0.8
1,784,568	-		CSW01_08310	0.87	+0.2
1,784,570	+		CSW01_08310	0.87	-1.1
1,784,573	+		CSW01_08310	0.87	-0.4
1,784,573	-		CSW01_08310	0.87	-0.4
1,784,637	-		CSW01_08310	0.89	+0.5
1,784,644	-		CSW01_08310	0.89	+0.0
1,784,646	-		CSW01_08310	0.89	+0.8
1,784,646	-		CSW01_08310	0.89	+0.1
1,784,646	-		CSW01_08310	0.89	+0.2
1,784,653	+		CSW01_08310	0.89	+0.8
1,784,661	-		CSW01_08310	0.90	+0.4
1,784,663	+		CSW01_08310	0.90	+0.0
1,784,685	+				+0.1
1,784,685	+				+0.2
1,784,693	-				+0.4
1,784,693	-				+0.2
1,784,693	-				+0.2
1,784,693	-				+1.1
1,784,762	+				-0.3
1,784,767	+				-0.1
1,784,770	-				+0.7
1,784,775	-				+0.2
1,784,775	-				-0.1
1,784,776	+				+0.2
1,784,782	-				+0.5
1,784,782	-				+1.2
1,784,785	+				+0.4
1,784,785	+				-1.5
1,784,797	-				+0.1
1,784,813	+				+1.4
1,784,816	-				-0.0
1,784,819	+				+1.2
1,784,820	+				+0.1
1,784,821	+				+0.0
1,784,827	-				+0.4
1,784,839	-				+0.2
1,784,845	+				+0.3
1,784,846	-				+0.3
1,784,856	+				+1.2
1,784,858	+				+0.9
1,784,870	+				+0.4
1,784,876	+				+0.5
1,784,893	+				+0.3
1,784,908	+				+1.0
1,784,908	+				+0.2
1,784,909	+				+0.2
1,784,909	+				+0.0
1,784,909	+				+0.4
1,784,909	+				+0.9
1,784,909	+				+0.1
1,784,909	+				+2.7
1,784,909	+				+1.8
1,784,909	+				-0.4
1,784,909	+				+0.5
1,784,909	+				+0.4
1,784,909	+				+0.1
1,784,909	+				+0.4
1,784,909	+				+0.3
1,784,914	+				-0.3
1,784,917	-				+0.3
1,784,917	-				+0.7
1,784,917	-				+0.1
1,784,917	-				+1.6
1,784,917	-				+0.2
1,784,917	-				+0.3
1,784,917	-				-0.1
1,784,917	-				+0.8
1,784,917	-				+0.4
1,784,917	-				-0.2
1,784,917	-				-0.4
1,784,917	-				+0.1
1,784,917	-				+0.5
1,784,917	-				-1.8
1,784,917	-				+0.3
1,784,917	-				+0.1
1,784,917	-				+0.1
1,784,919	+				+0.6
1,784,919	+				+0.3
1,784,919	+				+0.4
1,784,919	+				+1.5
1,784,919	+				+1.1
1,784,919	+				-0.1
1,784,919	+				-0.0
1,784,919	+				-1.6
1,784,927	-				+0.5
1,784,927	-				+0.4
1,784,956	+				+0.3
1,784,964	-				-0.1
1,784,964	-				+0.1
1,784,964	-				+0.2
1,784,964	-				+0.1
1,784,985	+				-0.5
1,784,985	+				+0.2
1,784,993	-				-0.1
1,784,993	-				-0.6
1,784,993	-				+0.8
1,784,993	-				-0.2
1,785,006	-				-1.0
1,785,024	+				+1.2
1,785,062	-				-0.0
1,785,088	-				-0.4
1,785,094	-				+1.1
1,785,184	-				-0.4
1,785,278	+				+0.6
1,785,283	+				-1.4
1,785,296	-				+1.5
1,785,338	-				+0.4
1,785,355	+				+0.0
1,785,363	-				-0.2
1,785,417	+				-0.4
1,785,442	+				-0.6
1,785,442	+				-0.5
1,785,450	-				-1.0
1,785,450	-				-0.2
1,785,514	-				+1.2
1,785,515	+				-0.2
1,785,522	-				+0.9
1,785,531	+				+1.4
1,785,531	+				+0.3
1,785,539	-				+0.2
1,785,550	+				+0.3
1,785,550	+				-0.8
1,785,573	+				-0.4
1,785,573	+				-0.0
1,785,591	+				+0.4
1,785,591	+				-0.4
1,785,591	+				-0.4
1,785,601	+				-0.2
1,785,609	-				-1.9
1,785,696	+				-0.6
1,785,696	+				-0.0
1,785,706	+				+0.5
1,785,706	+				-0.6
1,785,709	-				-1.1
1,785,771	+				-0.5
1,785,879	+		CSW01_08315	0.11	+0.4
1,785,890	+		CSW01_08315	0.12	+0.6
1,785,923	+		CSW01_08315	0.14	-0.0
1,785,948	+		CSW01_08315	0.16	-0.5
1,785,958	+		CSW01_08315	0.17	-0.6
1,785,966	-		CSW01_08315	0.17	+0.1
1,785,992	+		CSW01_08315	0.19	+0.7