Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06050

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06040 and CSW01_06045 are separated by 64 nucleotidesCSW01_06045 and CSW01_06050 are separated by 99 nucleotidesCSW01_06050 and CSW01_06055 are separated by 124 nucleotidesCSW01_06055 and CSW01_06060 are separated by 170 nucleotides CSW01_06040: CSW01_06040 - molecular chaperone DnaJ, at 1,265,473 to 1,266,525 _06040 CSW01_06045: CSW01_06045 - lipoprotein, at 1,266,590 to 1,267,261 _06045 CSW01_06050: CSW01_06050 - DUF2786 domain-containing protein, at 1,267,361 to 1,268,050 _06050 CSW01_06055: CSW01_06055 - DUF3334 domain-containing protein, at 1,268,175 to 1,268,870 _06055 CSW01_06060: CSW01_06060 - FAD-binding oxidoreductase, at 1,269,041 to 1,272,106 _06060 Position (kb) 1267 1268 1269Strain fitness (log2 ratio) -1 0 1at 1266.407 kb on + strand, within CSW01_06040at 1266.468 kb on + strandat 1266.468 kb on + strandat 1266.573 kb on - strandat 1266.582 kb on + strandat 1266.634 kb on - strandat 1266.855 kb on - strand, within CSW01_06045at 1266.889 kb on + strand, within CSW01_06045at 1266.896 kb on - strand, within CSW01_06045at 1266.992 kb on - strand, within CSW01_06045at 1266.997 kb on - strand, within CSW01_06045at 1267.007 kb on - strand, within CSW01_06045at 1267.046 kb on + strand, within CSW01_06045at 1267.146 kb on + strand, within CSW01_06045at 1267.154 kb on - strand, within CSW01_06045at 1267.209 kb on + strandat 1267.483 kb on + strand, within CSW01_06050at 1267.646 kb on + strand, within CSW01_06050at 1267.654 kb on - strand, within CSW01_06050at 1267.776 kb on - strand, within CSW01_06050at 1267.777 kb on + strand, within CSW01_06050at 1267.777 kb on - strand, within CSW01_06050at 1267.777 kb on - strand, within CSW01_06050at 1267.832 kb on - strand, within CSW01_06050at 1268.143 kb on + strandat 1268.294 kb on - strand, within CSW01_06055at 1268.332 kb on + strand, within CSW01_06055at 1268.399 kb on + strand, within CSW01_06055at 1268.400 kb on - strand, within CSW01_06055at 1268.418 kb on + strand, within CSW01_06055at 1268.474 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.574 kb on + strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.582 kb on - strand, within CSW01_06055at 1268.626 kb on + strand, within CSW01_06055at 1268.666 kb on + strand, within CSW01_06055at 1268.704 kb on - strand, within CSW01_06055at 1268.755 kb on + strand, within CSW01_06055at 1268.775 kb on - strand, within CSW01_06055at 1268.784 kb on + strand, within CSW01_06055at 1268.801 kb on - strandat 1268.836 kb on - strandat 1268.836 kb on - strandat 1268.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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1,266,407 + CSW01_06040 0.89 +0.2
1,266,468 + +0.1
1,266,468 + +0.2
1,266,573 - +0.6
1,266,582 + +0.2
1,266,634 - -0.4
1,266,855 - CSW01_06045 0.39 -1.1
1,266,889 + CSW01_06045 0.44 +0.1
1,266,896 - CSW01_06045 0.46 +0.9
1,266,992 - CSW01_06045 0.60 -0.5
1,266,997 - CSW01_06045 0.61 -0.1
1,267,007 - CSW01_06045 0.62 +0.2
1,267,046 + CSW01_06045 0.68 -0.1
1,267,146 + CSW01_06045 0.83 +0.8
1,267,154 - CSW01_06045 0.84 -0.1
1,267,209 + -0.1
1,267,483 + CSW01_06050 0.18 +0.6
1,267,646 + CSW01_06050 0.41 +1.4
1,267,654 - CSW01_06050 0.42 +0.4
1,267,776 - CSW01_06050 0.60 +0.4
1,267,777 + CSW01_06050 0.60 +0.4
1,267,777 - CSW01_06050 0.60 +0.6
1,267,777 - CSW01_06050 0.60 +1.2
1,267,832 - CSW01_06050 0.68 +0.4
1,268,143 + -0.4
1,268,294 - CSW01_06055 0.17 +0.6
1,268,332 + CSW01_06055 0.23 -0.2
1,268,399 + CSW01_06055 0.32 +0.9
1,268,400 - CSW01_06055 0.32 +0.7
1,268,418 + CSW01_06055 0.35 +0.5
1,268,474 + CSW01_06055 0.43 -0.2
1,268,574 + CSW01_06055 0.57 +0.6
1,268,574 + CSW01_06055 0.57 -0.1
1,268,574 + CSW01_06055 0.57 -0.5
1,268,574 + CSW01_06055 0.57 +0.5
1,268,574 + CSW01_06055 0.57 +0.3
1,268,574 + CSW01_06055 0.57 +0.6
1,268,582 - CSW01_06055 0.58 +0.4
1,268,582 - CSW01_06055 0.58 +0.3
1,268,582 - CSW01_06055 0.58 +0.4
1,268,582 - CSW01_06055 0.58 -0.3
1,268,582 - CSW01_06055 0.58 +0.4
1,268,626 + CSW01_06055 0.65 -0.2
1,268,666 + CSW01_06055 0.71 -0.6
1,268,704 - CSW01_06055 0.76 +0.3
1,268,755 + CSW01_06055 0.83 +0.3
1,268,775 - CSW01_06055 0.86 -1.1
1,268,784 + CSW01_06055 0.88 -1.2
1,268,801 - +0.1
1,268,836 - -0.6
1,268,836 - -0.3
1,268,981 + +1.2

Or see this region's nucleotide sequence