Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04255

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04250 and CSW01_04255 are separated by 440 nucleotidesCSW01_04255 and CSW01_04260 overlap by 16 nucleotidesCSW01_04260 and CSW01_04265 are separated by 542 nucleotides CSW01_04250: CSW01_04250 - toxin coregulated pilus biosynthesis protein I, at 885,282 to 887,144 _04250 CSW01_04255: CSW01_04255 - toxin coregulated pilus biosynthesis protein P, at 887,585 to 888,250 _04255 CSW01_04260: CSW01_04260 - pilus assembly protein, at 888,235 to 888,645 _04260 CSW01_04265: CSW01_04265 - toxin coregulated pilin, at 889,188 to 889,862 _04265 Position (kb) 887 888 889Strain fitness (log2 ratio) -1 0 1at 886.596 kb on - strand, within CSW01_04250at 886.598 kb on + strand, within CSW01_04250at 886.603 kb on - strand, within CSW01_04250at 886.605 kb on + strand, within CSW01_04250at 886.605 kb on + strand, within CSW01_04250at 886.605 kb on + strand, within CSW01_04250at 886.605 kb on + strand, within CSW01_04250at 886.605 kb on + strand, within CSW01_04250at 886.613 kb on - strand, within CSW01_04250at 886.613 kb on - strand, within CSW01_04250at 886.613 kb on - strand, within CSW01_04250at 886.613 kb on - strand, within CSW01_04250at 886.631 kb on - strand, within CSW01_04250at 886.646 kb on - strand, within CSW01_04250at 886.648 kb on + strand, within CSW01_04250at 886.653 kb on + strand, within CSW01_04250at 886.668 kb on + strand, within CSW01_04250at 886.670 kb on - strand, within CSW01_04250at 886.673 kb on + strand, within CSW01_04250at 886.676 kb on + strand, within CSW01_04250at 886.701 kb on + strand, within CSW01_04250at 886.714 kb on - strand, within CSW01_04250at 886.733 kb on - strand, within CSW01_04250at 886.733 kb on - strand, within CSW01_04250at 886.735 kb on + strand, within CSW01_04250at 886.735 kb on + strand, within CSW01_04250at 886.735 kb on + strand, within CSW01_04250at 886.742 kb on + strand, within CSW01_04250at 886.742 kb on + strand, within CSW01_04250at 886.742 kb on - strand, within CSW01_04250at 886.743 kb on - strand, within CSW01_04250at 886.743 kb on - strand, within CSW01_04250at 886.750 kb on - strand, within CSW01_04250at 886.750 kb on - strand, within CSW01_04250at 886.750 kb on - strand, within CSW01_04250at 886.834 kb on - strand, within CSW01_04250at 886.835 kb on + strand, within CSW01_04250at 886.835 kb on + strand, within CSW01_04250at 886.836 kb on + strand, within CSW01_04250at 886.836 kb on + strand, within CSW01_04250at 886.836 kb on + strand, within CSW01_04250at 886.843 kb on - strand, within CSW01_04250at 886.897 kb on - strand, within CSW01_04250at 886.897 kb on - strand, within CSW01_04250at 886.897 kb on - strand, within CSW01_04250at 886.897 kb on - strand, within CSW01_04250at 886.913 kb on - strand, within CSW01_04250at 886.923 kb on - strand, within CSW01_04250at 886.923 kb on - strand, within CSW01_04250at 886.988 kb on + strandat 886.988 kb on + strandat 886.996 kb on + strandat 886.996 kb on + strandat 887.018 kb on + strandat 887.026 kb on - strandat 887.026 kb on - strandat 887.051 kb on + strandat 887.060 kb on + strandat 887.068 kb on - strandat 887.081 kb on - strandat 887.302 kb on + strandat 887.311 kb on + strandat 887.311 kb on + strandat 887.367 kb on + strandat 887.367 kb on + strandat 887.367 kb on + strandat 887.369 kb on + strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.375 kb on - strandat 887.377 kb on - strandat 887.377 kb on - strandat 887.377 kb on - strandat 887.379 kb on + strandat 887.379 kb on + strandat 887.379 kb on + strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.387 kb on - strandat 887.588 kb on + strandat 887.588 kb on + strandat 887.588 kb on + strandat 887.590 kb on - strandat 887.623 kb on + strandat 887.631 kb on + strandat 887.636 kb on + strandat 887.653 kb on - strand, within CSW01_04255at 887.653 kb on - strand, within CSW01_04255at 887.653 kb on - strand, within CSW01_04255at 887.679 kb on - strand, within CSW01_04255at 887.687 kb on - strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.689 kb on + strand, within CSW01_04255at 887.697 kb on - strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.703 kb on + strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.711 kb on - strand, within CSW01_04255at 887.713 kb on + strand, within CSW01_04255at 887.803 kb on - strand, within CSW01_04255at 887.806 kb on - strand, within CSW01_04255at 887.814 kb on + strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.822 kb on - strand, within CSW01_04255at 887.858 kb on + strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 887.895 kb on - strand, within CSW01_04255at 888.079 kb on - strand, within CSW01_04255at 888.080 kb on - strand, within CSW01_04255at 888.105 kb on + strand, within CSW01_04255at 888.105 kb on + strand, within CSW01_04255at 888.113 kb on - strand, within CSW01_04255at 888.228 kb on + strandat 888.236 kb on - strandat 888.261 kb on - strandat 888.292 kb on + strand, within CSW01_04260at 888.301 kb on - strand, within CSW01_04260at 888.318 kb on - strand, within CSW01_04260at 888.391 kb on + strand, within CSW01_04260at 888.407 kb on + strand, within CSW01_04260at 888.420 kb on - strand, within CSW01_04260at 888.485 kb on - strand, within CSW01_04260at 888.519 kb on + strand, within CSW01_04260at 888.570 kb on + strand, within CSW01_04260at 888.600 kb on + strand, within CSW01_04260at 888.663 kb on + strandat 888.687 kb on + strandat 888.697 kb on + strandat 888.697 kb on + strandat 888.730 kb on - strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.732 kb on + strandat 888.740 kb on - strandat 888.740 kb on - strandat 888.788 kb on + strandat 888.788 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.799 kb on + strandat 888.803 kb on + strandat 888.806 kb on + strandat 888.807 kb on - strandat 888.807 kb on - strandat 888.829 kb on - strandat 888.829 kb on - strandat 888.834 kb on + strandat 888.866 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.034 kb on - strandat 889.138 kb on + strandat 889.143 kb on + strandat 889.146 kb on - strandat 889.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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886,596 - CSW01_04250 0.71 -0.1
886,598 + CSW01_04250 0.71 +0.1
886,603 - CSW01_04250 0.71 -0.4
886,605 + CSW01_04250 0.71 +0.2
886,605 + CSW01_04250 0.71 -0.6
886,605 + CSW01_04250 0.71 -0.2
886,605 + CSW01_04250 0.71 -0.0
886,605 + CSW01_04250 0.71 -1.4
886,613 - CSW01_04250 0.71 +0.1
886,613 - CSW01_04250 0.71 -0.0
886,613 - CSW01_04250 0.71 -0.2
886,613 - CSW01_04250 0.71 +0.2
886,631 - CSW01_04250 0.72 +0.4
886,646 - CSW01_04250 0.73 -0.2
886,648 + CSW01_04250 0.73 -0.3
886,653 + CSW01_04250 0.74 +0.2
886,668 + CSW01_04250 0.74 -0.1
886,670 - CSW01_04250 0.75 -0.8
886,673 + CSW01_04250 0.75 -1.3
886,676 + CSW01_04250 0.75 +0.0
886,701 + CSW01_04250 0.76 -1.1
886,714 - CSW01_04250 0.77 -0.9
886,733 - CSW01_04250 0.78 -0.5
886,733 - CSW01_04250 0.78 -0.1
886,735 + CSW01_04250 0.78 -1.0
886,735 + CSW01_04250 0.78 -0.4
886,735 + CSW01_04250 0.78 -0.2
886,742 + CSW01_04250 0.78 +0.2
886,742 + CSW01_04250 0.78 -0.0
886,742 - CSW01_04250 0.78 +0.0
886,743 - CSW01_04250 0.78 +0.4
886,743 - CSW01_04250 0.78 +0.1
886,750 - CSW01_04250 0.79 +0.1
886,750 - CSW01_04250 0.79 -0.3
886,750 - CSW01_04250 0.79 +0.2
886,834 - CSW01_04250 0.83 +0.1
886,835 + CSW01_04250 0.83 +0.7
886,835 + CSW01_04250 0.83 -0.4
886,836 + CSW01_04250 0.83 -0.9
886,836 + CSW01_04250 0.83 +0.1
886,836 + CSW01_04250 0.83 -0.1
886,843 - CSW01_04250 0.84 +0.0
886,897 - CSW01_04250 0.87 +0.0
886,897 - CSW01_04250 0.87 -0.0
886,897 - CSW01_04250 0.87 -0.1
886,897 - CSW01_04250 0.87 -0.2
886,913 - CSW01_04250 0.88 +0.2
886,923 - CSW01_04250 0.88 +0.1
886,923 - CSW01_04250 0.88 -1.5
886,988 + +0.7
886,988 + +0.3
886,996 + -0.3
886,996 + -0.3
887,018 + -0.2
887,026 - +0.1
887,026 - -0.2
887,051 + +0.4
887,060 + +0.9
887,068 - +0.3
887,081 - +0.2
887,302 + +0.8
887,311 + -0.9
887,311 + +0.0
887,367 + +0.0
887,367 + -0.4
887,367 + +0.0
887,369 + -0.8
887,375 - -0.7
887,375 - -0.2
887,375 - -0.3
887,375 - +0.6
887,375 - +0.3
887,375 - +0.3
887,375 - -0.1
887,375 - -0.0
887,375 - +0.4
887,375 - +1.0
887,375 - -0.1
887,377 - +0.3
887,377 - +0.1
887,377 - +0.3
887,379 + +0.2
887,379 + -0.6
887,379 + +0.6
887,387 - +0.3
887,387 - +0.1
887,387 - -0.0
887,387 - +0.8
887,387 - +0.5
887,588 + +0.9
887,588 + +0.2
887,588 + +0.3
887,590 - +0.3
887,623 + -0.0
887,631 + +0.2
887,636 + -0.2
887,653 - CSW01_04255 0.10 +0.2
887,653 - CSW01_04255 0.10 +0.0
887,653 - CSW01_04255 0.10 -0.0
887,679 - CSW01_04255 0.14 -1.0
887,687 - CSW01_04255 0.15 +0.1
887,689 + CSW01_04255 0.16 -0.1
887,689 + CSW01_04255 0.16 +0.1
887,689 + CSW01_04255 0.16 -0.0
887,697 - CSW01_04255 0.17 -0.2
887,703 + CSW01_04255 0.18 +0.3
887,703 + CSW01_04255 0.18 +1.1
887,703 + CSW01_04255 0.18 -0.1
887,703 + CSW01_04255 0.18 +0.6
887,703 + CSW01_04255 0.18 +0.6
887,703 + CSW01_04255 0.18 +0.6
887,703 + CSW01_04255 0.18 +0.4
887,703 + CSW01_04255 0.18 +0.0
887,703 + CSW01_04255 0.18 -0.4
887,703 + CSW01_04255 0.18 -0.4
887,711 - CSW01_04255 0.19 +0.6
887,711 - CSW01_04255 0.19 -0.3
887,711 - CSW01_04255 0.19 +0.5
887,711 - CSW01_04255 0.19 -1.0
887,711 - CSW01_04255 0.19 +0.9
887,711 - CSW01_04255 0.19 +0.2
887,711 - CSW01_04255 0.19 +0.2
887,711 - CSW01_04255 0.19 +0.2
887,711 - CSW01_04255 0.19 -0.3
887,711 - CSW01_04255 0.19 +1.1
887,711 - CSW01_04255 0.19 -0.0
887,711 - CSW01_04255 0.19 -0.2
887,711 - CSW01_04255 0.19 +0.1
887,711 - CSW01_04255 0.19 +0.1
887,713 + CSW01_04255 0.19 -0.0
887,803 - CSW01_04255 0.33 -0.1
887,806 - CSW01_04255 0.33 +0.2
887,814 + CSW01_04255 0.34 -0.9
887,822 - CSW01_04255 0.36 -0.2
887,822 - CSW01_04255 0.36 -1.2
887,822 - CSW01_04255 0.36 -0.7
887,858 + CSW01_04255 0.41 -0.3
887,895 - CSW01_04255 0.47 +0.3
887,895 - CSW01_04255 0.47 +1.0
887,895 - CSW01_04255 0.47 -0.5
888,079 - CSW01_04255 0.74 -0.1
888,080 - CSW01_04255 0.74 -0.0
888,105 + CSW01_04255 0.78 +0.4
888,105 + CSW01_04255 0.78 -0.1
888,113 - CSW01_04255 0.79 -0.8
888,228 + -0.1
888,236 - +0.2
888,261 - +0.1
888,292 + CSW01_04260 0.14 +0.3
888,301 - CSW01_04260 0.16 -0.0
888,318 - CSW01_04260 0.20 -0.2
888,391 + CSW01_04260 0.38 +0.2
888,407 + CSW01_04260 0.42 -1.4
888,420 - CSW01_04260 0.45 -0.6
888,485 - CSW01_04260 0.61 -0.6
888,519 + CSW01_04260 0.69 +0.1
888,570 + CSW01_04260 0.82 -0.2
888,600 + CSW01_04260 0.89 +1.0
888,663 + +0.0
888,687 + -0.5
888,697 + +0.3
888,697 + +0.1
888,730 - -0.2
888,732 + -0.3
888,732 + -0.4
888,732 + +0.2
888,740 - -0.1
888,740 - +0.6
888,788 + -0.2
888,788 + -0.3
888,799 + -0.0
888,799 + +0.1
888,799 + +0.4
888,803 + -0.1
888,806 + +0.1
888,807 - -0.4
888,807 - +0.8
888,829 - +0.1
888,829 - -0.2
888,834 + +0.8
888,866 - -0.4
889,034 - +1.1
889,034 - -0.9
889,034 - +0.4
889,138 + -0.1
889,143 + -0.1
889,146 - +1.0
889,249 + +0.1

Or see this region's nucleotide sequence