Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04220

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04215 and CSW01_04220 are separated by 25 nucleotidesCSW01_04220 and CSW01_04225 are separated by 341 nucleotides CSW01_04215: CSW01_04215 - IS481 family transposase ISVch1, at 871,986 to 872,963 _04215 CSW01_04220: CSW01_04220 - hypothetical protein, at 872,989 to 873,669 _04220 CSW01_04225: CSW01_04225 - aldehyde dehydrogenase, at 874,011 to 875,450 _04225 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 872.007 kb on + strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.016 kb on - strandat 872.107 kb on + strand, within CSW01_04215at 872.130 kb on + strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.196 kb on + strand, within CSW01_04215at 872.253 kb on + strand, within CSW01_04215at 872.280 kb on - strand, within CSW01_04215at 872.289 kb on + strand, within CSW01_04215at 872.293 kb on - strand, within CSW01_04215at 872.312 kb on - strand, within CSW01_04215at 872.373 kb on - strand, within CSW01_04215at 872.394 kb on + strand, within CSW01_04215at 872.408 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.469 kb on + strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.568 kb on + strand, within CSW01_04215at 872.728 kb on + strand, within CSW01_04215at 872.874 kb on + strandat 872.929 kb on + strandat 873.013 kb on - strandat 873.024 kb on + strandat 873.053 kb on + strandat 873.066 kb on - strand, within CSW01_04220at 873.070 kb on - strand, within CSW01_04220at 873.142 kb on - strand, within CSW01_04220at 873.191 kb on + strand, within CSW01_04220at 873.199 kb on - strand, within CSW01_04220at 873.199 kb on - strand, within CSW01_04220at 873.236 kb on + strand, within CSW01_04220at 873.236 kb on + strand, within CSW01_04220at 873.244 kb on - strand, within CSW01_04220at 873.303 kb on - strand, within CSW01_04220at 873.327 kb on + strand, within CSW01_04220at 873.335 kb on + strand, within CSW01_04220at 873.335 kb on - strand, within CSW01_04220at 873.335 kb on - strand, within CSW01_04220at 873.383 kb on - strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.391 kb on + strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.399 kb on - strand, within CSW01_04220at 873.408 kb on + strand, within CSW01_04220at 873.408 kb on + strand, within CSW01_04220at 873.409 kb on - strand, within CSW01_04220at 873.410 kb on + strand, within CSW01_04220at 873.416 kb on - strand, within CSW01_04220at 873.448 kb on + strand, within CSW01_04220at 873.449 kb on - strand, within CSW01_04220at 873.449 kb on - strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.458 kb on + strand, within CSW01_04220at 873.466 kb on - strand, within CSW01_04220at 873.473 kb on + strand, within CSW01_04220at 873.530 kb on + strand, within CSW01_04220at 873.530 kb on + strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.538 kb on - strand, within CSW01_04220at 873.547 kb on - strand, within CSW01_04220at 873.567 kb on + strand, within CSW01_04220at 873.570 kb on - strand, within CSW01_04220at 873.575 kb on - strand, within CSW01_04220at 873.611 kb on - strandat 873.613 kb on + strandat 873.618 kb on + strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.621 kb on - strandat 873.623 kb on + strandat 873.623 kb on + strandat 873.628 kb on - strandat 873.631 kb on - strandat 873.631 kb on - strandat 873.631 kb on - strandat 873.655 kb on - strandat 873.655 kb on - strandat 873.671 kb on + strandat 873.671 kb on + strandat 873.671 kb on + strandat 873.679 kb on - strandat 873.698 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.703 kb on + strandat 873.711 kb on - strandat 873.711 kb on - strandat 873.979 kb on + strandat 873.987 kb on + strandat 873.987 kb on + strandat 873.987 kb on - strandat 873.995 kb on - strandat 873.995 kb on - strandat 873.997 kb on - strandat 873.997 kb on - strandat 874.019 kb on + strandat 874.079 kb on + strandat 874.125 kb on + strandat 874.144 kb on + strandat 874.144 kb on + strandat 874.144 kb on + strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.152 kb on - strandat 874.159 kb on - strand, within CSW01_04225at 874.166 kb on + strand, within CSW01_04225at 874.174 kb on - strand, within CSW01_04225at 874.181 kb on - strand, within CSW01_04225at 874.182 kb on - strand, within CSW01_04225at 874.230 kb on - strand, within CSW01_04225at 874.240 kb on - strand, within CSW01_04225at 874.240 kb on - strand, within CSW01_04225at 874.240 kb on - strand, within CSW01_04225at 874.253 kb on - strand, within CSW01_04225at 874.253 kb on - strand, within CSW01_04225at 874.253 kb on - strand, within CSW01_04225at 874.257 kb on + strand, within CSW01_04225at 874.258 kb on + strand, within CSW01_04225at 874.269 kb on + strand, within CSW01_04225at 874.269 kb on + strand, within CSW01_04225at 874.276 kb on + strand, within CSW01_04225at 874.284 kb on - strand, within CSW01_04225at 874.284 kb on - strand, within CSW01_04225at 874.288 kb on + strand, within CSW01_04225at 874.288 kb on + strand, within CSW01_04225at 874.296 kb on - strand, within CSW01_04225at 874.457 kb on - strand, within CSW01_04225at 874.493 kb on - strand, within CSW01_04225at 874.496 kb on - strand, within CSW01_04225at 874.510 kb on - strand, within CSW01_04225at 874.626 kb on + strand, within CSW01_04225at 874.626 kb on + strand, within CSW01_04225at 874.626 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.627 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.632 kb on + strand, within CSW01_04225at 874.635 kb on - strand, within CSW01_04225at 874.635 kb on - strand, within CSW01_04225at 874.640 kb on - strand, within CSW01_04225at 874.640 kb on - strand, within CSW01_04225at 874.640 kb on - strand, within CSW01_04225at 874.641 kb on - strand, within CSW01_04225

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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872,007 + -1.0
872,015 - -0.2
872,015 - +0.1
872,015 - +0.6
872,016 - +0.4
872,107 + CSW01_04215 0.12 +1.7
872,130 + CSW01_04215 0.15 +2.7
872,138 - CSW01_04215 0.16 +1.1
872,138 - CSW01_04215 0.16 +1.4
872,196 + CSW01_04215 0.21 -0.0
872,253 + CSW01_04215 0.27 +0.1
872,280 - CSW01_04215 0.30 -0.3
872,289 + CSW01_04215 0.31 +0.5
872,293 - CSW01_04215 0.31 -0.7
872,312 - CSW01_04215 0.33 +0.4
872,373 - CSW01_04215 0.40 +1.1
872,394 + CSW01_04215 0.42 +1.0
872,408 + CSW01_04215 0.43 +0.4
872,435 + CSW01_04215 0.46 -0.4
872,435 + CSW01_04215 0.46 -0.4
872,443 - CSW01_04215 0.47 +0.6
872,443 - CSW01_04215 0.47 +0.1
872,469 + CSW01_04215 0.49 +1.0
872,485 - CSW01_04215 0.51 +0.7
872,485 - CSW01_04215 0.51 -0.6
872,485 - CSW01_04215 0.51 +0.2
872,568 + CSW01_04215 0.60 +0.1
872,728 + CSW01_04215 0.76 -0.6
872,874 + +0.7
872,929 + -0.0
873,013 - +0.3
873,024 + +0.6
873,053 + -0.2
873,066 - CSW01_04220 0.11 -0.6
873,070 - CSW01_04220 0.12 +0.7
873,142 - CSW01_04220 0.22 +2.9
873,191 + CSW01_04220 0.30 +0.4
873,199 - CSW01_04220 0.31 +0.5
873,199 - CSW01_04220 0.31 -0.2
873,236 + CSW01_04220 0.36 -1.0
873,236 + CSW01_04220 0.36 -0.5
873,244 - CSW01_04220 0.37 -0.0
873,303 - CSW01_04220 0.46 -1.0
873,327 + CSW01_04220 0.50 -0.2
873,335 + CSW01_04220 0.51 -0.3
873,335 - CSW01_04220 0.51 -0.2
873,335 - CSW01_04220 0.51 -0.5
873,383 - CSW01_04220 0.58 +0.7
873,391 + CSW01_04220 0.59 -0.6
873,391 + CSW01_04220 0.59 -0.2
873,391 + CSW01_04220 0.59 -0.2
873,391 + CSW01_04220 0.59 -0.9
873,399 - CSW01_04220 0.60 +0.2
873,399 - CSW01_04220 0.60 +0.3
873,399 - CSW01_04220 0.60 -0.4
873,408 + CSW01_04220 0.62 -0.7
873,408 + CSW01_04220 0.62 +0.8
873,409 - CSW01_04220 0.62 +0.0
873,410 + CSW01_04220 0.62 -1.0
873,416 - CSW01_04220 0.63 -0.9
873,448 + CSW01_04220 0.67 -0.0
873,449 - CSW01_04220 0.68 -0.9
873,449 - CSW01_04220 0.68 -0.3
873,458 + CSW01_04220 0.69 -0.0
873,458 + CSW01_04220 0.69 -1.0
873,458 + CSW01_04220 0.69 +0.4
873,466 - CSW01_04220 0.70 -0.3
873,473 + CSW01_04220 0.71 -0.3
873,530 + CSW01_04220 0.79 -0.7
873,530 + CSW01_04220 0.79 -0.3
873,538 - CSW01_04220 0.81 +0.3
873,538 - CSW01_04220 0.81 +1.2
873,538 - CSW01_04220 0.81 +0.2
873,538 - CSW01_04220 0.81 -1.1
873,547 - CSW01_04220 0.82 +0.1
873,567 + CSW01_04220 0.85 +1.4
873,570 - CSW01_04220 0.85 +0.3
873,575 - CSW01_04220 0.86 +0.4
873,611 - -0.0
873,613 + +0.3
873,618 + +0.9
873,621 - +1.1
873,621 - -0.3
873,621 - -0.1
873,621 - +0.0
873,623 + +0.7
873,623 + -0.0
873,628 - -1.2
873,631 - -0.4
873,631 - +0.5
873,631 - -0.2
873,655 - +2.3
873,655 - +2.7
873,671 + +0.4
873,671 + -0.3
873,671 + -0.1
873,679 - +2.2
873,698 + -0.1
873,703 + +0.4
873,703 + +0.7
873,703 + +0.9
873,703 + +0.6
873,711 - +0.7
873,711 - -0.2
873,979 + -1.1
873,987 + -0.4
873,987 + +0.4
873,987 - +0.2
873,995 - -0.1
873,995 - -0.7
873,997 - -0.5
873,997 - +0.7
874,019 + -0.2
874,079 + -0.8
874,125 + +0.1
874,144 + +0.3
874,144 + +0.3
874,144 + +0.2
874,152 - +0.1
874,152 - +0.3
874,152 - -0.1
874,152 - +0.6
874,152 - +0.7
874,152 - +0.5
874,152 - +0.6
874,152 - -0.7
874,152 - +0.0
874,159 - CSW01_04225 0.10 -0.4
874,166 + CSW01_04225 0.11 -0.4
874,174 - CSW01_04225 0.11 +0.2
874,181 - CSW01_04225 0.12 -0.4
874,182 - CSW01_04225 0.12 +0.6
874,230 - CSW01_04225 0.15 +0.6
874,240 - CSW01_04225 0.16 -0.4
874,240 - CSW01_04225 0.16 +0.4
874,240 - CSW01_04225 0.16 +0.2
874,253 - CSW01_04225 0.17 +1.4
874,253 - CSW01_04225 0.17 +0.0
874,253 - CSW01_04225 0.17 -0.3
874,257 + CSW01_04225 0.17 -0.3
874,258 + CSW01_04225 0.17 -0.4
874,269 + CSW01_04225 0.18 -0.6
874,269 + CSW01_04225 0.18 -1.1
874,276 + CSW01_04225 0.18 +0.1
874,284 - CSW01_04225 0.19 -0.5
874,284 - CSW01_04225 0.19 -0.1
874,288 + CSW01_04225 0.19 +0.3
874,288 + CSW01_04225 0.19 +0.2
874,296 - CSW01_04225 0.20 -0.5
874,457 - CSW01_04225 0.31 +0.2
874,493 - CSW01_04225 0.33 -0.0
874,496 - CSW01_04225 0.34 -0.1
874,510 - CSW01_04225 0.35 -0.0
874,626 + CSW01_04225 0.43 +1.0
874,626 + CSW01_04225 0.43 +0.6
874,626 + CSW01_04225 0.43 +0.4
874,627 + CSW01_04225 0.43 -0.3
874,627 + CSW01_04225 0.43 -0.5
874,627 + CSW01_04225 0.43 -1.2
874,627 + CSW01_04225 0.43 -1.2
874,627 + CSW01_04225 0.43 -0.5
874,627 + CSW01_04225 0.43 -0.6
874,627 + CSW01_04225 0.43 -0.6
874,632 + CSW01_04225 0.43 +0.2
874,632 + CSW01_04225 0.43 -0.5
874,632 + CSW01_04225 0.43 -0.6
874,632 + CSW01_04225 0.43 +0.4
874,632 + CSW01_04225 0.43 +0.4
874,632 + CSW01_04225 0.43 -1.2
874,632 + CSW01_04225 0.43 +1.1
874,632 + CSW01_04225 0.43 +0.7
874,632 + CSW01_04225 0.43 +0.2
874,635 - CSW01_04225 0.43 +0.2
874,635 - CSW01_04225 0.43 -0.0
874,640 - CSW01_04225 0.44 -0.4
874,640 - CSW01_04225 0.44 -0.4
874,640 - CSW01_04225 0.44 -2.9
874,641 - CSW01_04225 0.44 -0.6

Or see this region's nucleotide sequence