Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04000

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03995 and CSW01_04000 are separated by 311 nucleotidesCSW01_04000 and CSW01_04005 are separated by 100 nucleotides CSW01_03995: CSW01_03995 - hypothetical protein, at 824,039 to 824,632 _03995 CSW01_04000: CSW01_04000 - isochorismatase, at 824,944 to 825,825 _04000 CSW01_04005: CSW01_04005 - 2,3-dihydroxybenzoate-AMP ligase, at 825,926 to 827,557 _04005 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1at 824.028 kb on + strandat 824.033 kb on + strandat 824.041 kb on - strandat 824.053 kb on + strandat 824.058 kb on + strandat 824.104 kb on + strand, within CSW01_03995at 824.105 kb on - strand, within CSW01_03995at 824.112 kb on - strand, within CSW01_03995at 824.260 kb on - strand, within CSW01_03995at 824.265 kb on - strand, within CSW01_03995at 824.338 kb on - strand, within CSW01_03995at 824.382 kb on - strand, within CSW01_03995at 824.394 kb on - strand, within CSW01_03995at 824.566 kb on - strand, within CSW01_03995at 824.620 kb on - strandat 824.659 kb on - strandat 824.883 kb on - strandat 824.972 kb on - strandat 825.052 kb on + strand, within CSW01_04000at 825.121 kb on - strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.123 kb on + strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.131 kb on - strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.159 kb on + strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.167 kb on - strand, within CSW01_04000at 825.202 kb on + strand, within CSW01_04000at 825.289 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.350 kb on - strand, within CSW01_04000at 825.390 kb on + strand, within CSW01_04000at 825.498 kb on + strand, within CSW01_04000at 825.507 kb on - strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.569 kb on + strand, within CSW01_04000at 825.576 kb on + strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.577 kb on - strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.583 kb on + strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.591 kb on - strand, within CSW01_04000at 825.635 kb on - strand, within CSW01_04000at 825.665 kb on - strand, within CSW01_04000at 825.810 kb on + strandat 825.810 kb on + strandat 825.818 kb on - strandat 825.818 kb on - strandat 825.818 kb on - strandat 825.818 kb on - strandat 826.007 kb on - strandat 826.089 kb on + strandat 826.102 kb on + strand, within CSW01_04005at 826.102 kb on + strand, within CSW01_04005at 826.138 kb on + strand, within CSW01_04005at 826.146 kb on - strand, within CSW01_04005at 826.146 kb on - strand, within CSW01_04005at 826.285 kb on - strand, within CSW01_04005at 826.295 kb on + strand, within CSW01_04005at 826.340 kb on - strand, within CSW01_04005at 826.352 kb on + strand, within CSW01_04005at 826.360 kb on - strand, within CSW01_04005at 826.362 kb on + strand, within CSW01_04005at 826.370 kb on - strand, within CSW01_04005at 826.390 kb on + strand, within CSW01_04005at 826.398 kb on - strand, within CSW01_04005at 826.431 kb on + strand, within CSW01_04005at 826.473 kb on + strand, within CSW01_04005at 826.481 kb on - strand, within CSW01_04005at 826.492 kb on - strand, within CSW01_04005at 826.504 kb on + strand, within CSW01_04005at 826.516 kb on + strand, within CSW01_04005at 826.541 kb on + strand, within CSW01_04005at 826.549 kb on - strand, within CSW01_04005at 826.584 kb on + strand, within CSW01_04005at 826.639 kb on - strand, within CSW01_04005at 826.657 kb on + strand, within CSW01_04005at 826.686 kb on + strand, within CSW01_04005at 826.691 kb on + strand, within CSW01_04005at 826.694 kb on - strand, within CSW01_04005at 826.699 kb on - strand, within CSW01_04005at 826.771 kb on + strand, within CSW01_04005at 826.783 kb on + strand, within CSW01_04005

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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824,028 + +1.0
824,033 + +0.2
824,041 - +1.0
824,053 + +0.0
824,058 + +0.6
824,104 + CSW01_03995 0.11 +0.1
824,105 - CSW01_03995 0.11 +0.5
824,112 - CSW01_03995 0.12 -0.3
824,260 - CSW01_03995 0.37 +0.5
824,265 - CSW01_03995 0.38 -1.1
824,338 - CSW01_03995 0.50 -0.3
824,382 - CSW01_03995 0.58 -0.2
824,394 - CSW01_03995 0.60 +0.3
824,566 - CSW01_03995 0.89 +0.7
824,620 - -0.5
824,659 - +0.3
824,883 - +0.9
824,972 - +0.6
825,052 + CSW01_04000 0.12 +0.1
825,121 - CSW01_04000 0.20 +0.7
825,123 + CSW01_04000 0.20 +0.6
825,123 + CSW01_04000 0.20 -0.2
825,123 + CSW01_04000 0.20 -0.8
825,123 + CSW01_04000 0.20 +0.1
825,131 - CSW01_04000 0.21 +0.2
825,131 - CSW01_04000 0.21 -0.6
825,159 + CSW01_04000 0.24 +0.7
825,159 + CSW01_04000 0.24 +0.5
825,167 - CSW01_04000 0.25 +0.3
825,167 - CSW01_04000 0.25 +0.4
825,202 + CSW01_04000 0.29 +0.5
825,289 - CSW01_04000 0.39 +0.4
825,350 - CSW01_04000 0.46 -0.7
825,350 - CSW01_04000 0.46 +0.0
825,390 + CSW01_04000 0.51 +1.0
825,498 + CSW01_04000 0.63 +0.2
825,507 - CSW01_04000 0.64 +0.2
825,569 + CSW01_04000 0.71 +0.4
825,569 + CSW01_04000 0.71 -0.3
825,576 + CSW01_04000 0.72 +0.3
825,577 - CSW01_04000 0.72 -0.5
825,577 - CSW01_04000 0.72 -0.3
825,577 - CSW01_04000 0.72 +0.4
825,583 + CSW01_04000 0.72 +0.9
825,583 + CSW01_04000 0.72 +0.5
825,591 - CSW01_04000 0.73 +0.4
825,591 - CSW01_04000 0.73 +0.8
825,591 - CSW01_04000 0.73 -2.7
825,635 - CSW01_04000 0.78 +0.0
825,665 - CSW01_04000 0.82 +0.2
825,810 + -0.2
825,810 + -1.1
825,818 - +0.1
825,818 - +0.9
825,818 - +1.1
825,818 - +0.1
826,007 - +1.0
826,089 + +0.3
826,102 + CSW01_04005 0.11 +0.3
826,102 + CSW01_04005 0.11 +0.8
826,138 + CSW01_04005 0.13 +0.5
826,146 - CSW01_04005 0.13 -0.1
826,146 - CSW01_04005 0.13 +0.1
826,285 - CSW01_04005 0.22 -0.1
826,295 + CSW01_04005 0.23 +0.2
826,340 - CSW01_04005 0.25 +0.2
826,352 + CSW01_04005 0.26 +0.3
826,360 - CSW01_04005 0.27 +0.4
826,362 + CSW01_04005 0.27 +0.5
826,370 - CSW01_04005 0.27 -0.3
826,390 + CSW01_04005 0.28 +0.5
826,398 - CSW01_04005 0.29 +1.2
826,431 + CSW01_04005 0.31 +0.7
826,473 + CSW01_04005 0.34 -0.8
826,481 - CSW01_04005 0.34 -0.4
826,492 - CSW01_04005 0.35 +0.8
826,504 + CSW01_04005 0.35 +0.2
826,516 + CSW01_04005 0.36 +0.0
826,541 + CSW01_04005 0.38 +0.4
826,549 - CSW01_04005 0.38 +0.5
826,584 + CSW01_04005 0.40 -0.1
826,639 - CSW01_04005 0.44 +0.9
826,657 + CSW01_04005 0.45 -0.0
826,686 + CSW01_04005 0.47 +0.2
826,691 + CSW01_04005 0.47 +0.9
826,694 - CSW01_04005 0.47 -0.3
826,699 - CSW01_04005 0.47 +0.4
826,771 + CSW01_04005 0.52 -0.0
826,783 + CSW01_04005 0.53 +0.8

Or see this region's nucleotide sequence