Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03675

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03670 and CSW01_03675 overlap by 17 nucleotidesCSW01_03675 and CSW01_03680 are separated by 142 nucleotides CSW01_03670: CSW01_03670 - biofilm architecture maintenance protein MbaA, at 749,991 to 752,366 _03670 CSW01_03675: CSW01_03675 - norspermidine sensor, at 752,350 to 753,429 _03675 CSW01_03680: CSW01_03680 - bifunctional chorismate mutase/prephenate dehydratase, at 753,572 to 754,747 _03680 Position (kb) 752 753 754Strain fitness (log2 ratio) -1 0 1 2at 751.363 kb on - strand, within CSW01_03670at 751.446 kb on - strand, within CSW01_03670at 751.446 kb on - strand, within CSW01_03670at 751.455 kb on + strand, within CSW01_03670at 751.479 kb on - strand, within CSW01_03670at 751.480 kb on + strand, within CSW01_03670at 751.481 kb on + strand, within CSW01_03670at 751.488 kb on - strand, within CSW01_03670at 751.579 kb on - strand, within CSW01_03670at 751.603 kb on + strand, within CSW01_03670at 751.603 kb on + strand, within CSW01_03670at 751.611 kb on - strand, within CSW01_03670at 751.611 kb on - strand, within CSW01_03670at 751.638 kb on + strand, within CSW01_03670at 751.680 kb on + strand, within CSW01_03670at 751.688 kb on - strand, within CSW01_03670at 751.698 kb on + strand, within CSW01_03670at 751.706 kb on - strand, within CSW01_03670at 751.783 kb on + strand, within CSW01_03670at 751.897 kb on - strand, within CSW01_03670at 751.966 kb on - strand, within CSW01_03670at 752.102 kb on + strand, within CSW01_03670at 752.166 kb on - strandat 752.182 kb on + strandat 752.201 kb on - strandat 752.257 kb on + strandat 752.306 kb on + strandat 752.314 kb on - strandat 752.316 kb on + strandat 752.488 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.496 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.599 kb on + strand, within CSW01_03675at 752.607 kb on - strand, within CSW01_03675at 752.635 kb on + strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.729 kb on + strand, within CSW01_03675at 752.763 kb on + strand, within CSW01_03675at 752.767 kb on - strand, within CSW01_03675at 752.771 kb on - strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.805 kb on + strand, within CSW01_03675at 752.898 kb on - strand, within CSW01_03675at 752.902 kb on + strand, within CSW01_03675at 752.904 kb on + strand, within CSW01_03675at 752.912 kb on - strand, within CSW01_03675at 752.928 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.949 kb on + strand, within CSW01_03675at 753.067 kb on - strand, within CSW01_03675at 753.194 kb on - strand, within CSW01_03675at 753.251 kb on - strand, within CSW01_03675at 753.361 kb on - strandat 753.491 kb on - strandat 753.555 kb on - strandat 753.602 kb on - strandat 753.602 kb on - strandat 753.612 kb on + strandat 753.649 kb on - strandat 753.692 kb on - strand, within CSW01_03680at 753.713 kb on + strand, within CSW01_03680at 753.774 kb on - strand, within CSW01_03680at 753.806 kb on - strand, within CSW01_03680at 753.872 kb on + strand, within CSW01_03680at 754.002 kb on + strand, within CSW01_03680at 754.094 kb on + strand, within CSW01_03680at 754.104 kb on - strand, within CSW01_03680at 754.116 kb on + strand, within CSW01_03680at 754.124 kb on - strand, within CSW01_03680at 754.171 kb on + strand, within CSW01_03680at 754.171 kb on + strand, within CSW01_03680at 754.174 kb on + strand, within CSW01_03680at 754.179 kb on - strand, within CSW01_03680at 754.183 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.200 kb on - strand, within CSW01_03680at 754.202 kb on + strand, within CSW01_03680at 754.205 kb on - strand, within CSW01_03680at 754.207 kb on + strand, within CSW01_03680at 754.207 kb on + strand, within CSW01_03680at 754.209 kb on + strand, within CSW01_03680at 754.209 kb on + strand, within CSW01_03680at 754.210 kb on - strand, within CSW01_03680at 754.246 kb on + strand, within CSW01_03680at 754.254 kb on - strand, within CSW01_03680at 754.259 kb on - strand, within CSW01_03680at 754.318 kb on + strand, within CSW01_03680at 754.353 kb on + strand, within CSW01_03680at 754.387 kb on + strand, within CSW01_03680at 754.395 kb on - strand, within CSW01_03680at 754.422 kb on + strand, within CSW01_03680

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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751,363 - CSW01_03670 0.58 +0.3
751,446 - CSW01_03670 0.61 +0.4
751,446 - CSW01_03670 0.61 +0.5
751,455 + CSW01_03670 0.62 -0.0
751,479 - CSW01_03670 0.63 +1.3
751,480 + CSW01_03670 0.63 -0.3
751,481 + CSW01_03670 0.63 +1.3
751,488 - CSW01_03670 0.63 +0.7
751,579 - CSW01_03670 0.67 +1.1
751,603 + CSW01_03670 0.68 +0.3
751,603 + CSW01_03670 0.68 -0.2
751,611 - CSW01_03670 0.68 +0.6
751,611 - CSW01_03670 0.68 +0.4
751,638 + CSW01_03670 0.69 +1.0
751,680 + CSW01_03670 0.71 +0.9
751,688 - CSW01_03670 0.71 +0.3
751,698 + CSW01_03670 0.72 +0.3
751,706 - CSW01_03670 0.72 +0.8
751,783 + CSW01_03670 0.75 +0.0
751,897 - CSW01_03670 0.80 +0.3
751,966 - CSW01_03670 0.83 +0.6
752,102 + CSW01_03670 0.89 +0.7
752,166 - -0.0
752,182 + +0.1
752,201 - -0.2
752,257 + +0.3
752,306 + +0.5
752,314 - +0.7
752,316 + -1.0
752,488 + CSW01_03675 0.13 +0.6
752,490 + CSW01_03675 0.13 +0.3
752,490 + CSW01_03675 0.13 +0.0
752,490 + CSW01_03675 0.13 +0.6
752,490 + CSW01_03675 0.13 +0.9
752,496 - CSW01_03675 0.14 +0.6
752,498 - CSW01_03675 0.14 -0.3
752,498 - CSW01_03675 0.14 -1.1
752,498 - CSW01_03675 0.14 +0.3
752,498 - CSW01_03675 0.14 +0.4
752,599 + CSW01_03675 0.23 +0.3
752,607 - CSW01_03675 0.24 -0.5
752,635 + CSW01_03675 0.26 +1.0
752,694 - CSW01_03675 0.32 +0.4
752,694 - CSW01_03675 0.32 -0.4
752,694 - CSW01_03675 0.32 +1.2
752,729 + CSW01_03675 0.35 +0.7
752,763 + CSW01_03675 0.38 +1.2
752,767 - CSW01_03675 0.39 +0.5
752,771 - CSW01_03675 0.39 +0.7
752,782 + CSW01_03675 0.40 +0.8
752,782 + CSW01_03675 0.40 +0.6
752,782 + CSW01_03675 0.40 +0.8
752,782 + CSW01_03675 0.40 +0.7
752,790 - CSW01_03675 0.41 -0.1
752,790 - CSW01_03675 0.41 +0.5
752,805 + CSW01_03675 0.42 +0.7
752,898 - CSW01_03675 0.51 -0.4
752,902 + CSW01_03675 0.51 +1.2
752,904 + CSW01_03675 0.51 +0.9
752,912 - CSW01_03675 0.52 +0.2
752,928 - CSW01_03675 0.54 +0.2
752,929 - CSW01_03675 0.54 +0.9
752,929 - CSW01_03675 0.54 +0.3
752,949 + CSW01_03675 0.55 +0.9
753,067 - CSW01_03675 0.66 -1.6
753,194 - CSW01_03675 0.78 -0.7
753,251 - CSW01_03675 0.83 +1.9
753,361 - -0.4
753,491 - +0.3
753,555 - -0.1
753,602 - +1.4
753,602 - +0.4
753,612 + +1.1
753,649 - +0.6
753,692 - CSW01_03680 0.10 +0.6
753,713 + CSW01_03680 0.12 +0.4
753,774 - CSW01_03680 0.17 -0.2
753,806 - CSW01_03680 0.20 +0.3
753,872 + CSW01_03680 0.26 +0.3
754,002 + CSW01_03680 0.37 +0.7
754,094 + CSW01_03680 0.44 -0.4
754,104 - CSW01_03680 0.45 -0.4
754,116 + CSW01_03680 0.46 +1.1
754,124 - CSW01_03680 0.47 +0.1
754,171 + CSW01_03680 0.51 +0.6
754,171 + CSW01_03680 0.51 +0.9
754,174 + CSW01_03680 0.51 +0.4
754,179 - CSW01_03680 0.52 +1.5
754,183 + CSW01_03680 0.52 -0.4
754,197 + CSW01_03680 0.53 +0.2
754,197 + CSW01_03680 0.53 +1.1
754,197 + CSW01_03680 0.53 -0.3
754,197 + CSW01_03680 0.53 +0.3
754,197 + CSW01_03680 0.53 +1.1
754,197 + CSW01_03680 0.53 +0.5
754,197 + CSW01_03680 0.53 -0.4
754,200 - CSW01_03680 0.53 -1.7
754,202 + CSW01_03680 0.54 +0.3
754,205 - CSW01_03680 0.54 +0.2
754,207 + CSW01_03680 0.54 +0.3
754,207 + CSW01_03680 0.54 +0.8
754,209 + CSW01_03680 0.54 -0.2
754,209 + CSW01_03680 0.54 -0.4
754,210 - CSW01_03680 0.54 -1.4
754,246 + CSW01_03680 0.57 -0.4
754,254 - CSW01_03680 0.58 -0.2
754,259 - CSW01_03680 0.58 -1.0
754,318 + CSW01_03680 0.63 +0.5
754,353 + CSW01_03680 0.66 +1.0
754,387 + CSW01_03680 0.69 -0.1
754,395 - CSW01_03680 0.70 +0.9
754,422 + CSW01_03680 0.72 -0.3

Or see this region's nucleotide sequence