Experiment: LB_Aerobic_18HR_ZN18B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03070 and CSW01_03075 are separated by 2 nucleotides CSW01_03075 and CSW01_03080 are separated by 3 nucleotides CSW01_03080 and CSW01_03085 overlap by 14 nucleotides CSW01_03085 and CSW01_03090 are separated by 69 nucleotides CSW01_03090 and CSW01_03095 overlap by 28 nucleotides
CSW01_03070: CSW01_03070 - hemolysin, at 606,831 to 607,400
_03070
CSW01_03075: CSW01_03075 - phosphoheptose isomerase, at 607,403 to 607,993
_03075
CSW01_03080: CSW01_03080 - YraN family protein, at 607,997 to 608,365
_03080
CSW01_03085: CSW01_03085 - penicillin-binding protein activator, at 608,352 to 610,157
_03085
CSW01_03090: CSW01_03090 - rRNA (cytidine-2'-O-)-methyltransferase, at 610,227 to 611,093
_03090
CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251
_03095
Position (kb) 608
609
610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 607.355 kb on - strand at 607.355 kb on - strand at 607.357 kb on - strand at 607.385 kb on + strand at 607.393 kb on - strand at 607.393 kb on - strand at 607.393 kb on - strand at 607.454 kb on + strand at 607.459 kb on - strand at 607.917 kb on - strand, within CSW01_03075 at 607.922 kb on + strand, within CSW01_03075 at 608.041 kb on - strand, within CSW01_03080 at 608.143 kb on + strand, within CSW01_03080 at 608.143 kb on + strand, within CSW01_03080 at 608.220 kb on - strand, within CSW01_03080 at 608.220 kb on - strand, within CSW01_03080 at 608.284 kb on + strand, within CSW01_03080 at 608.360 kb on + strand at 610.243 kb on - strand at 610.303 kb on + strand at 610.326 kb on + strand, within CSW01_03090 at 610.334 kb on - strand, within CSW01_03090 at 610.334 kb on - strand, within CSW01_03090 at 610.434 kb on - strand, within CSW01_03090 at 610.446 kb on + strand, within CSW01_03090 at 610.446 kb on + strand, within CSW01_03090 at 610.447 kb on - strand, within CSW01_03090 at 610.476 kb on + strand, within CSW01_03090 at 610.482 kb on - strand, within CSW01_03090 at 610.488 kb on + strand, within CSW01_03090 at 610.502 kb on - strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.601 kb on + strand, within CSW01_03090 at 610.611 kb on - strand, within CSW01_03090 at 610.616 kb on - strand, within CSW01_03090 at 610.624 kb on - strand, within CSW01_03090 at 610.700 kb on - strand, within CSW01_03090 at 610.743 kb on + strand, within CSW01_03090 at 610.818 kb on - strand, within CSW01_03090 at 610.828 kb on - strand, within CSW01_03090 at 610.839 kb on + strand, within CSW01_03090 at 610.892 kb on - strand, within CSW01_03090 at 611.021 kb on - strand at 611.124 kb on + strand, within CSW01_03095
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B remove 607,355 - -0.2 607,355 - +0.4 607,357 - +1.0 607,385 + -0.4 607,393 - +1.9 607,393 - +0.2 607,393 - +0.3 607,454 + +1.1 607,459 - +1.6 607,917 - CSW01_03075 0.87 +0.7 607,922 + CSW01_03075 0.88 -0.3 608,041 - CSW01_03080 0.12 -0.3 608,143 + CSW01_03080 0.40 +0.1 608,143 + CSW01_03080 0.40 -1.9 608,220 - CSW01_03080 0.60 +0.1 608,220 - CSW01_03080 0.60 -0.3 608,284 + CSW01_03080 0.78 +0.3 608,360 + +0.3 610,243 - +0.3 610,303 + +0.2 610,326 + CSW01_03090 0.11 +0.2 610,334 - CSW01_03090 0.12 -0.9 610,334 - CSW01_03090 0.12 +0.4 610,434 - CSW01_03090 0.24 -0.7 610,446 + CSW01_03090 0.25 -0.1 610,446 + CSW01_03090 0.25 -0.1 610,447 - CSW01_03090 0.25 -0.2 610,476 + CSW01_03090 0.29 +0.3 610,482 - CSW01_03090 0.29 +0.3 610,488 + CSW01_03090 0.30 -0.9 610,502 - CSW01_03090 0.32 +1.1 610,512 + CSW01_03090 0.33 +0.3 610,512 + CSW01_03090 0.33 -0.1 610,512 + CSW01_03090 0.33 -0.7 610,512 + CSW01_03090 0.33 +0.7 610,512 + CSW01_03090 0.33 -0.4 610,520 - CSW01_03090 0.34 -0.7 610,520 - CSW01_03090 0.34 +1.3 610,520 - CSW01_03090 0.34 -0.7 610,601 + CSW01_03090 0.43 +1.2 610,611 - CSW01_03090 0.44 +0.4 610,616 - CSW01_03090 0.45 -0.3 610,624 - CSW01_03090 0.46 +0.5 610,700 - CSW01_03090 0.55 +0.1 610,743 + CSW01_03090 0.60 +0.9 610,818 - CSW01_03090 0.68 -0.2 610,828 - CSW01_03090 0.69 +0.7 610,839 + CSW01_03090 0.71 +1.0 610,892 - CSW01_03090 0.77 -0.6 611,021 - -1.1 611,124 + CSW01_03095 0.31 -3.3
Or see this region's nucleotide sequence