Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02855

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02850 and CSW01_02855 are separated by 76 nucleotidesCSW01_02855 and CSW01_02860 are separated by 10 nucleotidesCSW01_02860 and CSW01_02865 overlap by 4 nucleotides CSW01_02850: CSW01_02850 - sulfate ABC transporter substrate-binding protein, at 568,700 to 569,701 _02850 CSW01_02855: CSW01_02855 - sulfate/thiosulfate ABC transporter permease CysT, at 569,778 to 570,629 _02855 CSW01_02860: CSW01_02860 - sulfate ABC transporter permease subunit CysW, at 570,640 to 571,503 _02860 CSW01_02865: CSW01_02865 - sulfate/thiosulfate import ATP-binding protein CysA, at 571,500 to 572,630 _02865 Position (kb) 569 570 571Strain fitness (log2 ratio) -2 -1 0 1at 568.800 kb on + strandat 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.832 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.909 kb on - strand, within CSW01_02850at 568.919 kb on + strand, within CSW01_02850at 568.988 kb on + strand, within CSW01_02850at 569.087 kb on - strand, within CSW01_02850at 569.158 kb on - strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.228 kb on - strand, within CSW01_02850at 569.280 kb on - strand, within CSW01_02850at 569.338 kb on - strand, within CSW01_02850at 569.348 kb on - strand, within CSW01_02850at 569.461 kb on + strand, within CSW01_02850at 569.503 kb on + strand, within CSW01_02850at 569.504 kb on - strand, within CSW01_02850at 569.514 kb on + strand, within CSW01_02850at 569.559 kb on + strand, within CSW01_02850at 569.567 kb on - strand, within CSW01_02850at 569.621 kb on - strandat 569.623 kb on - strandat 569.743 kb on + strandat 569.751 kb on - strandat 569.751 kb on - strandat 569.788 kb on + strandat 569.893 kb on - strand, within CSW01_02855at 569.898 kb on - strand, within CSW01_02855at 569.979 kb on - strand, within CSW01_02855at 570.019 kb on - strand, within CSW01_02855at 570.092 kb on + strand, within CSW01_02855at 570.113 kb on + strand, within CSW01_02855at 570.121 kb on - strand, within CSW01_02855at 570.172 kb on + strand, within CSW01_02855at 570.194 kb on - strand, within CSW01_02855at 570.228 kb on - strand, within CSW01_02855at 570.245 kb on - strand, within CSW01_02855at 570.270 kb on + strand, within CSW01_02855at 570.273 kb on - strand, within CSW01_02855at 570.315 kb on + strand, within CSW01_02855at 570.322 kb on + strand, within CSW01_02855at 570.330 kb on - strand, within CSW01_02855at 570.365 kb on - strand, within CSW01_02855at 570.402 kb on - strand, within CSW01_02855at 570.407 kb on - strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.436 kb on - strand, within CSW01_02855at 570.470 kb on - strand, within CSW01_02855at 570.598 kb on + strandat 570.598 kb on + strandat 570.606 kb on - strandat 570.606 kb on - strandat 570.648 kb on + strandat 570.648 kb on + strandat 570.656 kb on - strandat 570.656 kb on - strandat 570.738 kb on - strand, within CSW01_02860at 570.774 kb on + strand, within CSW01_02860at 570.784 kb on - strand, within CSW01_02860at 570.805 kb on - strand, within CSW01_02860at 570.830 kb on + strand, within CSW01_02860at 570.888 kb on + strand, within CSW01_02860at 571.024 kb on + strand, within CSW01_02860at 571.025 kb on + strand, within CSW01_02860at 571.058 kb on + strand, within CSW01_02860at 571.078 kb on + strand, within CSW01_02860at 571.081 kb on - strand, within CSW01_02860at 571.208 kb on + strand, within CSW01_02860at 571.218 kb on + strand, within CSW01_02860at 571.226 kb on - strand, within CSW01_02860at 571.247 kb on - strand, within CSW01_02860at 571.273 kb on + strand, within CSW01_02860at 571.279 kb on - strand, within CSW01_02860at 571.281 kb on - strand, within CSW01_02860at 571.289 kb on - strand, within CSW01_02860at 571.319 kb on - strand, within CSW01_02860at 571.331 kb on - strand, within CSW01_02860at 571.381 kb on + strand, within CSW01_02860at 571.438 kb on + strandat 571.496 kb on + strandat 571.605 kb on - strandat 571.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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568,800 + -0.4
568,818 - CSW01_02850 0.12 -0.6
568,818 - CSW01_02850 0.12 +1.6
568,818 - CSW01_02850 0.12 +0.1
568,832 - CSW01_02850 0.13 +0.5
568,880 - CSW01_02850 0.18 +0.7
568,880 - CSW01_02850 0.18 +0.3
568,909 - CSW01_02850 0.21 +0.4
568,919 + CSW01_02850 0.22 +0.6
568,988 + CSW01_02850 0.29 +0.2
569,087 - CSW01_02850 0.39 -0.4
569,158 - CSW01_02850 0.46 +0.1
569,183 + CSW01_02850 0.48 -0.7
569,183 + CSW01_02850 0.48 -0.4
569,183 + CSW01_02850 0.48 +0.1
569,183 + CSW01_02850 0.48 -0.4
569,191 - CSW01_02850 0.49 -0.1
569,191 - CSW01_02850 0.49 -0.1
569,215 + CSW01_02850 0.51 +1.3
569,215 + CSW01_02850 0.51 +0.4
569,223 - CSW01_02850 0.52 -0.4
569,223 - CSW01_02850 0.52 -0.9
569,223 - CSW01_02850 0.52 +0.7
569,228 - CSW01_02850 0.53 -2.1
569,280 - CSW01_02850 0.58 -0.2
569,338 - CSW01_02850 0.64 +1.3
569,348 - CSW01_02850 0.65 +0.7
569,461 + CSW01_02850 0.76 -0.4
569,503 + CSW01_02850 0.80 -1.9
569,504 - CSW01_02850 0.80 +0.7
569,514 + CSW01_02850 0.81 +0.9
569,559 + CSW01_02850 0.86 +1.7
569,567 - CSW01_02850 0.87 +0.1
569,621 - -1.3
569,623 - -0.0
569,743 + +0.5
569,751 - -2.3
569,751 - -0.0
569,788 + +0.3
569,893 - CSW01_02855 0.13 +1.2
569,898 - CSW01_02855 0.14 -0.7
569,979 - CSW01_02855 0.24 -0.6
570,019 - CSW01_02855 0.28 +0.0
570,092 + CSW01_02855 0.37 +0.6
570,113 + CSW01_02855 0.39 +0.8
570,121 - CSW01_02855 0.40 -0.7
570,172 + CSW01_02855 0.46 +0.4
570,194 - CSW01_02855 0.49 +0.0
570,228 - CSW01_02855 0.53 +0.4
570,245 - CSW01_02855 0.55 +0.5
570,270 + CSW01_02855 0.58 +0.0
570,273 - CSW01_02855 0.58 -0.4
570,315 + CSW01_02855 0.63 +0.9
570,322 + CSW01_02855 0.64 +0.0
570,330 - CSW01_02855 0.65 -0.1
570,365 - CSW01_02855 0.69 +0.6
570,402 - CSW01_02855 0.73 +0.4
570,407 - CSW01_02855 0.74 -0.0
570,418 + CSW01_02855 0.75 +1.1
570,418 + CSW01_02855 0.75 -0.0
570,418 + CSW01_02855 0.75 -0.2
570,418 + CSW01_02855 0.75 -0.3
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 +1.0
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 +0.2
570,418 + CSW01_02855 0.75 -0.4
570,418 + CSW01_02855 0.75 +0.3
570,418 + CSW01_02855 0.75 +0.3
570,426 - CSW01_02855 0.76 -0.2
570,426 - CSW01_02855 0.76 +0.2
570,426 - CSW01_02855 0.76 +0.2
570,426 - CSW01_02855 0.76 -2.4
570,426 - CSW01_02855 0.76 -0.6
570,426 - CSW01_02855 0.76 -0.1
570,426 - CSW01_02855 0.76 +1.2
570,426 - CSW01_02855 0.76 -0.0
570,426 - CSW01_02855 0.76 +0.1
570,426 - CSW01_02855 0.76 -0.4
570,426 - CSW01_02855 0.76 -0.4
570,426 - CSW01_02855 0.76 -1.1
570,426 - CSW01_02855 0.76 -0.1
570,428 + CSW01_02855 0.76 +0.1
570,428 + CSW01_02855 0.76 -1.3
570,428 + CSW01_02855 0.76 -0.4
570,436 - CSW01_02855 0.77 +0.7
570,470 - CSW01_02855 0.81 +1.0
570,598 + -0.0
570,598 + +1.2
570,606 - -0.2
570,606 - -0.5
570,648 + -0.0
570,648 + +0.3
570,656 - -0.3
570,656 - +0.9
570,738 - CSW01_02860 0.11 +0.5
570,774 + CSW01_02860 0.16 +0.7
570,784 - CSW01_02860 0.17 -0.3
570,805 - CSW01_02860 0.19 +0.0
570,830 + CSW01_02860 0.22 +0.9
570,888 + CSW01_02860 0.29 +0.5
571,024 + CSW01_02860 0.44 -0.4
571,025 + CSW01_02860 0.45 +1.5
571,058 + CSW01_02860 0.48 -0.1
571,078 + CSW01_02860 0.51 +0.3
571,081 - CSW01_02860 0.51 -0.6
571,208 + CSW01_02860 0.66 +1.3
571,218 + CSW01_02860 0.67 +0.3
571,226 - CSW01_02860 0.68 -0.1
571,247 - CSW01_02860 0.70 +0.9
571,273 + CSW01_02860 0.73 -0.6
571,279 - CSW01_02860 0.74 +0.0
571,281 - CSW01_02860 0.74 +0.3
571,289 - CSW01_02860 0.75 -0.1
571,319 - CSW01_02860 0.79 +1.0
571,331 - CSW01_02860 0.80 -0.0
571,381 + CSW01_02860 0.86 +0.4
571,438 + -0.6
571,496 + -1.5
571,605 - +0.5
571,606 - +0.1

Or see this region's nucleotide sequence