Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02625

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02620 and CSW01_02625 are separated by 61 nucleotidesCSW01_02625 and CSW01_02630 are separated by 53 nucleotidesCSW01_02630 and CSW01_02635 are separated by 63 nucleotidesCSW01_02635 and CSW01_02640 are separated by 81 nucleotides CSW01_02620: CSW01_02620 - inovirus Gp2 family protein, at 527,045 to 527,689 _02620 CSW01_02625: CSW01_02625 - inovirus Gp2 family protein, at 527,751 to 528,425 _02625 CSW01_02630: CSW01_02630 - inovirus Gp2 family protein, at 528,479 to 529,078 _02630 CSW01_02635: CSW01_02635 - AlpA family transcriptional regulator, at 529,142 to 529,342 _02635 CSW01_02640: CSW01_02640 - ribonuclease H, at 529,424 to 529,864 _02640 Position (kb) 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 526.831 kb on + strandat 526.969 kb on + strandat 527.038 kb on - strandat 527.139 kb on + strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.148 kb on - strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.171 kb on - strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.209 kb on + strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.229 kb on - strand, within CSW01_02620at 527.238 kb on - strand, within CSW01_02620at 527.297 kb on + strand, within CSW01_02620at 527.325 kb on + strand, within CSW01_02620at 527.330 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.480 kb on + strand, within CSW01_02620at 527.503 kb on - strand, within CSW01_02620at 527.511 kb on - strand, within CSW01_02620at 527.513 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.588 kb on - strand, within CSW01_02620at 527.593 kb on + strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.617 kb on + strand, within CSW01_02620at 527.625 kb on - strandat 527.679 kb on + strandat 527.687 kb on - strandat 527.702 kb on + strandat 527.755 kb on - strandat 527.775 kb on - strandat 527.792 kb on - strandat 527.828 kb on + strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.833 kb on + strand, within CSW01_02625at 527.841 kb on - strand, within CSW01_02625at 527.848 kb on - strand, within CSW01_02625at 527.853 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.880 kb on + strand, within CSW01_02625at 527.931 kb on + strand, within CSW01_02625at 527.932 kb on + strand, within CSW01_02625at 527.935 kb on - strand, within CSW01_02625at 527.940 kb on - strand, within CSW01_02625at 527.973 kb on - strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.090 kb on - strand, within CSW01_02625at 528.139 kb on - strand, within CSW01_02625at 528.181 kb on - strand, within CSW01_02625at 528.182 kb on - strand, within CSW01_02625at 528.231 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.256 kb on - strand, within CSW01_02625at 528.258 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.283 kb on + strand, within CSW01_02625at 528.301 kb on + strand, within CSW01_02625at 528.370 kb on - strandat 528.390 kb on + strandat 528.405 kb on - strandat 528.469 kb on + strandat 528.469 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.481 kb on + strandat 528.489 kb on - strandat 528.492 kb on - strandat 528.504 kb on + strandat 528.512 kb on - strandat 528.541 kb on + strand, within CSW01_02630at 528.557 kb on - strand, within CSW01_02630at 528.612 kb on - strand, within CSW01_02630at 528.655 kb on + strand, within CSW01_02630at 528.677 kb on + strand, within CSW01_02630at 528.747 kb on - strand, within CSW01_02630at 528.759 kb on - strand, within CSW01_02630at 528.772 kb on - strand, within CSW01_02630at 528.779 kb on + strand, within CSW01_02630at 528.789 kb on + strand, within CSW01_02630at 528.854 kb on - strand, within CSW01_02630at 528.868 kb on + strand, within CSW01_02630at 528.878 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.911 kb on + strand, within CSW01_02630at 528.912 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 528.919 kb on - strand, within CSW01_02630at 529.004 kb on + strand, within CSW01_02630at 529.012 kb on - strand, within CSW01_02630at 529.013 kb on + strand, within CSW01_02630at 529.026 kb on - strandat 529.068 kb on + strandat 529.076 kb on - strandat 529.076 kb on - strandat 529.080 kb on - strandat 529.094 kb on + strandat 529.099 kb on + strandat 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.215 kb on - strand, within CSW01_02635at 529.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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526,831 + +0.4
526,969 + -0.1
527,038 - +0.7
527,139 + CSW01_02620 0.15 +0.7
527,147 - CSW01_02620 0.16 +0.6
527,147 - CSW01_02620 0.16 +0.0
527,148 - CSW01_02620 0.16 +0.1
527,163 + CSW01_02620 0.18 +0.7
527,163 + CSW01_02620 0.18 -0.7
527,163 + CSW01_02620 0.18 +0.3
527,163 + CSW01_02620 0.18 -0.3
527,163 + CSW01_02620 0.18 +1.3
527,171 - CSW01_02620 0.20 -1.6
527,201 + CSW01_02620 0.24 -0.4
527,201 + CSW01_02620 0.24 +0.5
527,201 + CSW01_02620 0.24 +0.7
527,209 + CSW01_02620 0.25 -2.1
527,209 - CSW01_02620 0.25 -0.1
527,209 - CSW01_02620 0.25 +1.4
527,229 - CSW01_02620 0.29 +0.4
527,238 - CSW01_02620 0.30 +0.1
527,297 + CSW01_02620 0.39 +0.1
527,325 + CSW01_02620 0.43 -0.0
527,330 - CSW01_02620 0.44 +0.3
527,435 - CSW01_02620 0.60 -0.5
527,435 - CSW01_02620 0.60 +0.2
527,435 - CSW01_02620 0.60 +0.5
527,480 + CSW01_02620 0.67 -0.0
527,503 - CSW01_02620 0.71 +1.3
527,511 - CSW01_02620 0.72 -0.8
527,513 + CSW01_02620 0.73 +1.1
527,571 + CSW01_02620 0.82 +0.6
527,571 + CSW01_02620 0.82 -0.2
527,571 + CSW01_02620 0.82 -1.2
527,579 - CSW01_02620 0.83 +0.4
527,579 - CSW01_02620 0.83 -0.2
527,588 - CSW01_02620 0.84 -0.4
527,593 + CSW01_02620 0.85 +0.4
527,601 - CSW01_02620 0.86 +0.1
527,601 - CSW01_02620 0.86 -0.1
527,617 + CSW01_02620 0.89 +0.7
527,625 - -0.6
527,679 + -0.2
527,687 - -0.0
527,702 + +0.2
527,755 - +0.3
527,775 - +0.1
527,792 - -0.4
527,828 + CSW01_02625 0.11 -0.4
527,831 - CSW01_02625 0.12 -0.5
527,831 - CSW01_02625 0.12 -0.8
527,833 + CSW01_02625 0.12 +0.2
527,841 - CSW01_02625 0.13 -0.0
527,848 - CSW01_02625 0.14 +0.2
527,853 - CSW01_02625 0.15 -0.2
527,868 - CSW01_02625 0.17 -0.5
527,868 - CSW01_02625 0.17 +0.0
527,880 + CSW01_02625 0.19 +0.7
527,931 + CSW01_02625 0.27 +0.3
527,932 + CSW01_02625 0.27 -0.2
527,935 - CSW01_02625 0.27 +0.5
527,940 - CSW01_02625 0.28 -0.1
527,973 - CSW01_02625 0.33 -0.8
528,017 + CSW01_02625 0.39 +2.0
528,017 + CSW01_02625 0.39 +0.8
528,090 - CSW01_02625 0.50 +0.1
528,139 - CSW01_02625 0.57 -0.4
528,181 - CSW01_02625 0.64 +0.6
528,182 - CSW01_02625 0.64 -1.3
528,231 + CSW01_02625 0.71 +0.7
528,250 + CSW01_02625 0.74 -0.1
528,250 + CSW01_02625 0.74 +0.1
528,255 + CSW01_02625 0.75 -0.8
528,255 + CSW01_02625 0.75 +0.7
528,255 + CSW01_02625 0.75 -0.0
528,255 + CSW01_02625 0.75 +0.5
528,255 + CSW01_02625 0.75 +0.1
528,255 + CSW01_02625 0.75 +0.0
528,256 - CSW01_02625 0.75 -0.8
528,258 - CSW01_02625 0.75 +0.7
528,263 - CSW01_02625 0.76 -0.0
528,263 - CSW01_02625 0.76 -0.5
528,263 - CSW01_02625 0.76 -0.2
528,263 - CSW01_02625 0.76 +1.0
528,283 + CSW01_02625 0.79 -0.1
528,301 + CSW01_02625 0.81 -0.5
528,370 - +0.4
528,390 + +0.5
528,405 - +0.4
528,469 + +0.0
528,469 + +0.9
528,470 + +0.2
528,470 + +0.2
528,470 + +0.1
528,470 + +0.5
528,470 + -0.5
528,478 - -0.3
528,478 - -0.3
528,478 - -0.3
528,478 - +0.1
528,478 - +0.4
528,478 - -0.1
528,478 - +0.9
528,478 - +0.2
528,478 - +1.0
528,478 - -0.2
528,481 + +0.6
528,489 - +0.6
528,492 - +1.8
528,504 + -0.1
528,512 - +1.2
528,541 + CSW01_02630 0.10 +0.6
528,557 - CSW01_02630 0.13 +0.2
528,612 - CSW01_02630 0.22 +0.3
528,655 + CSW01_02630 0.29 +0.5
528,677 + CSW01_02630 0.33 -0.0
528,747 - CSW01_02630 0.45 -0.2
528,759 - CSW01_02630 0.47 -0.4
528,772 - CSW01_02630 0.49 +0.2
528,779 + CSW01_02630 0.50 +0.1
528,789 + CSW01_02630 0.52 +0.3
528,854 - CSW01_02630 0.62 -0.0
528,868 + CSW01_02630 0.65 +0.0
528,878 + CSW01_02630 0.67 +0.4
528,911 + CSW01_02630 0.72 +0.3
528,911 + CSW01_02630 0.72 +1.2
528,911 + CSW01_02630 0.72 +0.9
528,911 + CSW01_02630 0.72 +0.1
528,911 + CSW01_02630 0.72 +0.2
528,912 - CSW01_02630 0.72 -0.4
528,919 - CSW01_02630 0.73 +0.5
528,919 - CSW01_02630 0.73 -0.7
528,919 - CSW01_02630 0.73 +0.0
528,919 - CSW01_02630 0.73 +0.1
528,919 - CSW01_02630 0.73 +0.6
528,919 - CSW01_02630 0.73 +0.2
529,004 + CSW01_02630 0.88 +1.5
529,012 - CSW01_02630 0.89 -0.1
529,013 + CSW01_02630 0.89 +0.7
529,026 - -0.1
529,068 + -1.0
529,076 - +0.3
529,076 - +2.3
529,080 - -0.5
529,094 + -0.7
529,099 + -0.6
529,181 + CSW01_02635 0.19 -0.6
529,181 + CSW01_02635 0.19 +0.8
529,181 + CSW01_02635 0.19 -1.4
529,181 + CSW01_02635 0.19 +0.7
529,181 + CSW01_02635 0.19 +0.3
529,181 + CSW01_02635 0.19 -0.1
529,181 + CSW01_02635 0.19 +0.1
529,181 + CSW01_02635 0.19 +0.1
529,181 + CSW01_02635 0.19 +0.0
529,181 + CSW01_02635 0.19 +0.9
529,181 + CSW01_02635 0.19 -0.2
529,181 + CSW01_02635 0.19 +0.2
529,181 + CSW01_02635 0.19 +0.5
529,189 - CSW01_02635 0.23 -0.2
529,189 - CSW01_02635 0.23 +0.0
529,189 - CSW01_02635 0.23 +0.1
529,189 - CSW01_02635 0.23 +0.5
529,189 - CSW01_02635 0.23 +1.2
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 +0.7
529,189 - CSW01_02635 0.23 +0.4
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 +0.5
529,189 - CSW01_02635 0.23 +0.4
529,215 - CSW01_02635 0.36 -0.1
529,332 + +1.0

Or see this region's nucleotide sequence