Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02575

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02565 and CSW01_02570 are separated by 332 nucleotidesCSW01_02570 and CSW01_02575 are separated by 71 nucleotidesCSW01_02575 and CSW01_02580 are separated by 415 nucleotides CSW01_02565: CSW01_02565 - oxidative stress defense protein, at 512,220 to 512,936 _02565 CSW01_02570: CSW01_02570 - hypothetical protein, at 513,269 to 513,400 _02570 CSW01_02575: CSW01_02575 - pyruvate kinase PykF, at 513,472 to 514,884 _02575 CSW01_02580: CSW01_02580 - DeoR/GlpR transcriptional regulator, at 515,300 to 516,082 _02580 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 512.525 kb on + strand, within CSW01_02565at 512.548 kb on - strand, within CSW01_02565at 512.590 kb on + strand, within CSW01_02565at 512.654 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.755 kb on - strand, within CSW01_02565at 512.761 kb on - strand, within CSW01_02565at 512.812 kb on + strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.872 kb on + strandat 512.932 kb on - strandat 512.964 kb on - strandat 513.237 kb on + strandat 513.286 kb on + strand, within CSW01_02570at 513.313 kb on + strand, within CSW01_02570at 513.321 kb on + strand, within CSW01_02570at 513.322 kb on - strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.364 kb on + strand, within CSW01_02570at 513.369 kb on + strand, within CSW01_02570at 513.372 kb on - strand, within CSW01_02570at 513.447 kb on + strandat 513.447 kb on + strandat 513.532 kb on - strandat 513.707 kb on + strand, within CSW01_02575at 513.803 kb on - strand, within CSW01_02575at 514.423 kb on - strand, within CSW01_02575at 514.502 kb on - strand, within CSW01_02575at 514.938 kb on - strandat 514.978 kb on + strandat 514.986 kb on - strandat 515.087 kb on + strandat 515.087 kb on + strandat 515.087 kb on + strandat 515.087 kb on + strandat 515.088 kb on + strandat 515.088 kb on + strandat 515.090 kb on + strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.095 kb on - strandat 515.108 kb on - strandat 515.382 kb on + strand, within CSW01_02580at 515.382 kb on + strand, within CSW01_02580at 515.435 kb on + strand, within CSW01_02580at 515.435 kb on + strand, within CSW01_02580at 515.557 kb on + strand, within CSW01_02580at 515.652 kb on + strand, within CSW01_02580at 515.660 kb on - strand, within CSW01_02580at 515.726 kb on + strand, within CSW01_02580at 515.792 kb on + strand, within CSW01_02580at 515.792 kb on + strand, within CSW01_02580at 515.837 kb on - strand, within CSW01_02580at 515.843 kb on + strand, within CSW01_02580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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512,525 + CSW01_02565 0.43 +0.5
512,548 - CSW01_02565 0.46 -0.1
512,590 + CSW01_02565 0.52 +0.5
512,654 + CSW01_02565 0.61 -0.4
512,735 + CSW01_02565 0.72 +0.5
512,735 + CSW01_02565 0.72 +0.3
512,735 + CSW01_02565 0.72 +1.8
512,743 - CSW01_02565 0.73 -0.7
512,743 - CSW01_02565 0.73 +0.4
512,743 - CSW01_02565 0.73 +0.4
512,755 - CSW01_02565 0.75 +1.3
512,761 - CSW01_02565 0.75 +2.1
512,812 + CSW01_02565 0.83 -1.4
512,820 - CSW01_02565 0.84 -0.5
512,820 - CSW01_02565 0.84 +1.5
512,820 - CSW01_02565 0.84 -0.7
512,820 - CSW01_02565 0.84 +0.0
512,820 - CSW01_02565 0.84 +0.0
512,820 - CSW01_02565 0.84 +0.2
512,872 + +0.2
512,932 - -1.0
512,964 - -1.0
513,237 + -0.8
513,286 + CSW01_02570 0.13 +1.0
513,313 + CSW01_02570 0.33 +1.7
513,321 + CSW01_02570 0.39 -0.3
513,322 - CSW01_02570 0.40 -0.3
513,364 + CSW01_02570 0.72 +0.4
513,364 + CSW01_02570 0.72 -0.2
513,364 + CSW01_02570 0.72 -1.0
513,364 + CSW01_02570 0.72 +0.2
513,369 + CSW01_02570 0.76 -0.3
513,372 - CSW01_02570 0.78 -0.2
513,447 + -0.6
513,447 + +2.9
513,532 - -0.5
513,707 + CSW01_02575 0.17 +0.2
513,803 - CSW01_02575 0.23 +0.8
514,423 - CSW01_02575 0.67 -0.8
514,502 - CSW01_02575 0.73 -0.8
514,938 - +0.1
514,978 + +0.8
514,986 - -0.5
515,087 + -1.0
515,087 + -0.4
515,087 + +0.3
515,087 + -1.5
515,088 + -0.0
515,088 + +0.9
515,090 + +0.8
515,095 - -0.7
515,095 - -0.2
515,095 - -0.8
515,095 - +0.3
515,095 - +0.6
515,095 - -0.2
515,095 - +0.7
515,095 - -0.9
515,095 - -0.7
515,095 - +0.6
515,095 - +0.1
515,095 - +0.2
515,095 - +0.8
515,095 - +1.4
515,095 - +0.0
515,095 - +0.1
515,095 - -0.5
515,095 - -0.9
515,108 - +0.2
515,382 + CSW01_02580 0.10 +0.4
515,382 + CSW01_02580 0.10 +0.7
515,435 + CSW01_02580 0.17 -0.3
515,435 + CSW01_02580 0.17 +0.2
515,557 + CSW01_02580 0.33 +0.3
515,652 + CSW01_02580 0.45 +0.2
515,660 - CSW01_02580 0.46 +0.8
515,726 + CSW01_02580 0.54 +0.1
515,792 + CSW01_02580 0.63 +0.3
515,792 + CSW01_02580 0.63 +1.1
515,837 - CSW01_02580 0.69 -2.6
515,843 + CSW01_02580 0.69 -1.2

Or see this region's nucleotide sequence