Experiment: LB_Aerobic_18HR_ZN18B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02040 and CSW01_02045 are separated by 107 nucleotides CSW01_02045 and CSW01_02050 are separated by 25 nucleotides CSW01_02050 and CSW01_02055 are separated by 473 nucleotides
CSW01_02040: CSW01_02040 - 23S ribosomal RNA, at 402,533 to 405,448
_02040
CSW01_02045: CSW01_02045 - 5S ribosomal RNA, at 405,556 to 405,671
_02045
CSW01_02050: CSW01_02050 - tRNA-Asp, at 405,697 to 405,773
_02050
CSW01_02055: CSW01_02055 - sodium:proton antiporter, at 406,247 to 407,581
_02055
Position (kb) 405
406 Strain fitness (log2 ratio) -1
0
1
2
3 at 405.974 kb on + strand at 406.013 kb on - strand at 406.147 kb on + strand at 406.277 kb on + strand at 406.389 kb on + strand, within CSW01_02055 at 406.389 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.458 kb on + strand, within CSW01_02055 at 406.466 kb on - strand, within CSW01_02055 at 406.493 kb on + strand, within CSW01_02055 at 406.590 kb on - strand, within CSW01_02055 at 406.644 kb on + strand, within CSW01_02055 at 406.744 kb on + strand, within CSW01_02055 at 406.744 kb on + strand, within CSW01_02055
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B remove 405,974 + +1.2 406,013 - +0.3 406,147 + +1.0 406,277 + +1.6 406,389 + CSW01_02055 0.11 +0.1 406,389 + CSW01_02055 0.11 +0.6 406,458 + CSW01_02055 0.16 +3.1 406,458 + CSW01_02055 0.16 +0.5 406,458 + CSW01_02055 0.16 -0.2 406,458 + CSW01_02055 0.16 +0.9 406,458 + CSW01_02055 0.16 +1.4 406,458 + CSW01_02055 0.16 +1.0 406,466 - CSW01_02055 0.16 +0.5 406,493 + CSW01_02055 0.18 +0.8 406,590 - CSW01_02055 0.26 -0.2 406,644 + CSW01_02055 0.30 +1.3 406,744 + CSW01_02055 0.37 +0.4 406,744 + CSW01_02055 0.37 -0.5
Or see this region's nucleotide sequence