Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01825

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01820 and CSW01_01825 are separated by 6 nucleotidesCSW01_01825 and CSW01_01830 overlap by 4 nucleotides CSW01_01820: CSW01_01820 - N-acetylmuramoyl-L-alanine amidase, at 364,061 to 365,806 _01820 CSW01_01825: CSW01_01825 - DNA mismatch repair protein MutL, at 365,813 to 367,774 _01825 CSW01_01830: CSW01_01830 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 367,771 to 368,718 _01830 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2at 364.841 kb on - strand, within CSW01_01820at 364.985 kb on + strand, within CSW01_01820at 364.993 kb on - strand, within CSW01_01820at 365.016 kb on - strand, within CSW01_01820at 365.065 kb on + strand, within CSW01_01820at 365.073 kb on - strand, within CSW01_01820at 365.083 kb on + strand, within CSW01_01820at 365.119 kb on + strand, within CSW01_01820at 365.220 kb on - strand, within CSW01_01820at 365.253 kb on + strand, within CSW01_01820at 365.261 kb on - strand, within CSW01_01820at 365.318 kb on + strand, within CSW01_01820at 365.326 kb on - strand, within CSW01_01820at 365.330 kb on + strand, within CSW01_01820at 365.356 kb on + strand, within CSW01_01820at 365.410 kb on + strand, within CSW01_01820at 365.426 kb on + strand, within CSW01_01820at 365.465 kb on - strand, within CSW01_01820at 365.466 kb on - strand, within CSW01_01820at 365.468 kb on + strand, within CSW01_01820at 365.479 kb on + strand, within CSW01_01820at 365.487 kb on - strand, within CSW01_01820at 365.502 kb on + strand, within CSW01_01820at 365.510 kb on - strand, within CSW01_01820at 365.510 kb on - strand, within CSW01_01820at 365.561 kb on - strand, within CSW01_01820at 365.607 kb on + strand, within CSW01_01820at 365.607 kb on + strand, within CSW01_01820at 365.615 kb on - strand, within CSW01_01820at 365.643 kb on + strandat 365.675 kb on + strandat 365.675 kb on + strandat 365.676 kb on - strandat 365.683 kb on - strandat 365.683 kb on - strandat 365.683 kb on - strandat 365.685 kb on + strandat 365.716 kb on - strandat 365.752 kb on + strandat 365.760 kb on - strandat 365.760 kb on - strandat 365.760 kb on - strandat 365.762 kb on + strandat 365.770 kb on - strandat 365.770 kb on - strandat 365.860 kb on + strandat 366.015 kb on - strand, within CSW01_01825at 366.015 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.026 kb on - strand, within CSW01_01825at 366.030 kb on + strand, within CSW01_01825at 366.077 kb on + strand, within CSW01_01825at 366.104 kb on + strand, within CSW01_01825at 366.104 kb on + strand, within CSW01_01825at 366.114 kb on + strand, within CSW01_01825at 366.114 kb on + strand, within CSW01_01825at 366.122 kb on - strand, within CSW01_01825at 366.125 kb on + strand, within CSW01_01825at 366.125 kb on + strand, within CSW01_01825at 366.133 kb on - strand, within CSW01_01825at 366.133 kb on - strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.138 kb on + strand, within CSW01_01825at 366.209 kb on + strand, within CSW01_01825at 366.235 kb on + strand, within CSW01_01825at 366.237 kb on - strand, within CSW01_01825at 366.355 kb on - strand, within CSW01_01825at 366.355 kb on - strand, within CSW01_01825at 366.357 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.369 kb on + strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.377 kb on - strand, within CSW01_01825at 366.409 kb on - strand, within CSW01_01825at 366.510 kb on + strand, within CSW01_01825at 366.510 kb on + strand, within CSW01_01825at 366.518 kb on - strand, within CSW01_01825at 366.518 kb on - strand, within CSW01_01825at 366.538 kb on + strand, within CSW01_01825at 366.566 kb on + strand, within CSW01_01825at 366.566 kb on + strand, within CSW01_01825at 366.574 kb on - strand, within CSW01_01825at 366.608 kb on - strand, within CSW01_01825at 366.696 kb on - strand, within CSW01_01825at 366.706 kb on + strand, within CSW01_01825at 366.729 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.782 kb on + strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.790 kb on - strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.799 kb on + strand, within CSW01_01825at 366.807 kb on + strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.807 kb on - strand, within CSW01_01825at 366.814 kb on + strand, within CSW01_01825at 366.814 kb on + strand, within CSW01_01825at 366.821 kb on + strand, within CSW01_01825at 366.822 kb on - strand, within CSW01_01825at 366.822 kb on - strand, within CSW01_01825at 366.871 kb on + strand, within CSW01_01825at 366.940 kb on - strand, within CSW01_01825at 366.984 kb on - strand, within CSW01_01825at 366.998 kb on - strand, within CSW01_01825at 367.003 kb on + strand, within CSW01_01825at 367.010 kb on - strand, within CSW01_01825at 367.151 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.247 kb on + strand, within CSW01_01825at 367.248 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.255 kb on - strand, within CSW01_01825at 367.271 kb on + strand, within CSW01_01825at 367.277 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.279 kb on - strand, within CSW01_01825at 367.329 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.338 kb on - strand, within CSW01_01825at 367.343 kb on - strand, within CSW01_01825at 367.383 kb on + strand, within CSW01_01825at 367.446 kb on + strand, within CSW01_01825at 367.456 kb on + strand, within CSW01_01825at 367.479 kb on + strand, within CSW01_01825at 367.479 kb on + strand, within CSW01_01825at 367.575 kb on + strand, within CSW01_01825at 367.580 kb on + strandat 367.588 kb on - strandat 367.588 kb on - strandat 367.588 kb on - strandat 367.608 kb on + strandat 367.608 kb on + strandat 367.616 kb on - strandat 367.616 kb on - strandat 367.677 kb on + strandat 367.797 kb on + strandat 367.797 kb on + strandat 367.967 kb on - strand, within CSW01_01830at 368.052 kb on + strand, within CSW01_01830at 368.106 kb on - strand, within CSW01_01830at 368.220 kb on + strand, within CSW01_01830at 368.347 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.378 kb on + strand, within CSW01_01830at 368.386 kb on - strand, within CSW01_01830at 368.453 kb on - strand, within CSW01_01830at 368.629 kb on - strandat 368.637 kb on - strandat 368.637 kb on - strandat 368.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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364,841 - CSW01_01820 0.45 -0.1
364,985 + CSW01_01820 0.53 -0.7
364,993 - CSW01_01820 0.53 -1.1
365,016 - CSW01_01820 0.55 +0.9
365,065 + CSW01_01820 0.58 +0.9
365,073 - CSW01_01820 0.58 -0.1
365,083 + CSW01_01820 0.59 +0.9
365,119 + CSW01_01820 0.61 -1.1
365,220 - CSW01_01820 0.66 +0.9
365,253 + CSW01_01820 0.68 +0.5
365,261 - CSW01_01820 0.69 +0.7
365,318 + CSW01_01820 0.72 +0.3
365,326 - CSW01_01820 0.72 +0.3
365,330 + CSW01_01820 0.73 -0.5
365,356 + CSW01_01820 0.74 +0.7
365,410 + CSW01_01820 0.77 +1.2
365,426 + CSW01_01820 0.78 +0.8
365,465 - CSW01_01820 0.80 +0.1
365,466 - CSW01_01820 0.80 -0.0
365,468 + CSW01_01820 0.81 +0.4
365,479 + CSW01_01820 0.81 -0.1
365,487 - CSW01_01820 0.82 -0.4
365,502 + CSW01_01820 0.83 +0.3
365,510 - CSW01_01820 0.83 +0.0
365,510 - CSW01_01820 0.83 +0.6
365,561 - CSW01_01820 0.86 +1.1
365,607 + CSW01_01820 0.89 -0.6
365,607 + CSW01_01820 0.89 +1.2
365,615 - CSW01_01820 0.89 +0.7
365,643 + +0.5
365,675 + +0.9
365,675 + -0.1
365,676 - +0.5
365,683 - +0.5
365,683 - +0.3
365,683 - -0.5
365,685 + -0.4
365,716 - -0.0
365,752 + +0.2
365,760 - +0.3
365,760 - +2.1
365,760 - +0.2
365,762 + +0.5
365,770 - +0.3
365,770 - +0.1
365,860 + -0.4
366,015 - CSW01_01825 0.10 +0.3
366,015 - CSW01_01825 0.10 +2.1
366,026 - CSW01_01825 0.11 +1.1
366,026 - CSW01_01825 0.11 +0.5
366,026 - CSW01_01825 0.11 +0.2
366,030 + CSW01_01825 0.11 -0.2
366,077 + CSW01_01825 0.13 +0.1
366,104 + CSW01_01825 0.15 +0.4
366,104 + CSW01_01825 0.15 -0.3
366,114 + CSW01_01825 0.15 +0.0
366,114 + CSW01_01825 0.15 +0.2
366,122 - CSW01_01825 0.16 +0.0
366,125 + CSW01_01825 0.16 +0.2
366,125 + CSW01_01825 0.16 +0.6
366,133 - CSW01_01825 0.16 -0.0
366,133 - CSW01_01825 0.16 +1.7
366,138 + CSW01_01825 0.17 +0.5
366,138 + CSW01_01825 0.17 +1.1
366,138 + CSW01_01825 0.17 +0.3
366,138 + CSW01_01825 0.17 +1.0
366,138 + CSW01_01825 0.17 +0.6
366,209 + CSW01_01825 0.20 +0.7
366,235 + CSW01_01825 0.22 +0.7
366,237 - CSW01_01825 0.22 +0.5
366,355 - CSW01_01825 0.28 +0.3
366,355 - CSW01_01825 0.28 -0.0
366,357 + CSW01_01825 0.28 +1.0
366,369 + CSW01_01825 0.28 +1.9
366,369 + CSW01_01825 0.28 +0.3
366,369 + CSW01_01825 0.28 -0.3
366,369 + CSW01_01825 0.28 +1.3
366,369 + CSW01_01825 0.28 +0.3
366,369 + CSW01_01825 0.28 +0.6
366,377 - CSW01_01825 0.29 +0.3
366,377 - CSW01_01825 0.29 +0.2
366,377 - CSW01_01825 0.29 +1.2
366,409 - CSW01_01825 0.30 +0.4
366,510 + CSW01_01825 0.36 +2.7
366,510 + CSW01_01825 0.36 +0.4
366,518 - CSW01_01825 0.36 +0.3
366,518 - CSW01_01825 0.36 -0.4
366,538 + CSW01_01825 0.37 +0.9
366,566 + CSW01_01825 0.38 -0.6
366,566 + CSW01_01825 0.38 -0.1
366,574 - CSW01_01825 0.39 -0.7
366,608 - CSW01_01825 0.41 +0.6
366,696 - CSW01_01825 0.45 -1.1
366,706 + CSW01_01825 0.46 -0.1
366,729 + CSW01_01825 0.47 +0.7
366,782 + CSW01_01825 0.49 -0.1
366,782 + CSW01_01825 0.49 +0.1
366,782 + CSW01_01825 0.49 -0.1
366,782 + CSW01_01825 0.49 +0.0
366,782 + CSW01_01825 0.49 +0.3
366,782 + CSW01_01825 0.49 +0.5
366,782 + CSW01_01825 0.49 +0.0
366,790 - CSW01_01825 0.50 -0.1
366,790 - CSW01_01825 0.50 +1.1
366,790 - CSW01_01825 0.50 +0.4
366,790 - CSW01_01825 0.50 +0.2
366,790 - CSW01_01825 0.50 -0.1
366,790 - CSW01_01825 0.50 +0.9
366,790 - CSW01_01825 0.50 +0.3
366,790 - CSW01_01825 0.50 -0.4
366,790 - CSW01_01825 0.50 +1.3
366,799 + CSW01_01825 0.50 +0.4
366,799 + CSW01_01825 0.50 +0.5
366,799 + CSW01_01825 0.50 +0.5
366,799 + CSW01_01825 0.50 +0.7
366,807 + CSW01_01825 0.51 +1.9
366,807 - CSW01_01825 0.51 +0.4
366,807 - CSW01_01825 0.51 +0.3
366,807 - CSW01_01825 0.51 +0.5
366,814 + CSW01_01825 0.51 +0.2
366,814 + CSW01_01825 0.51 +0.5
366,821 + CSW01_01825 0.51 +0.5
366,822 - CSW01_01825 0.51 +1.4
366,822 - CSW01_01825 0.51 +0.1
366,871 + CSW01_01825 0.54 -1.1
366,940 - CSW01_01825 0.57 +0.6
366,984 - CSW01_01825 0.60 +0.5
366,998 - CSW01_01825 0.60 +1.6
367,003 + CSW01_01825 0.61 +0.4
367,010 - CSW01_01825 0.61 +0.3
367,151 + CSW01_01825 0.68 +1.6
367,247 + CSW01_01825 0.73 +0.1
367,247 + CSW01_01825 0.73 +0.5
367,247 + CSW01_01825 0.73 +0.6
367,247 + CSW01_01825 0.73 +0.6
367,248 - CSW01_01825 0.73 -0.2
367,255 - CSW01_01825 0.73 -0.6
367,255 - CSW01_01825 0.73 +0.9
367,255 - CSW01_01825 0.73 -0.2
367,255 - CSW01_01825 0.73 +0.6
367,271 + CSW01_01825 0.74 +0.1
367,277 - CSW01_01825 0.75 -0.1
367,279 - CSW01_01825 0.75 +0.6
367,279 - CSW01_01825 0.75 -0.5
367,279 - CSW01_01825 0.75 +2.4
367,279 - CSW01_01825 0.75 +0.4
367,329 - CSW01_01825 0.77 -0.6
367,338 - CSW01_01825 0.78 +0.5
367,338 - CSW01_01825 0.78 +1.6
367,338 - CSW01_01825 0.78 -0.6
367,343 - CSW01_01825 0.78 -1.1
367,383 + CSW01_01825 0.80 -0.2
367,446 + CSW01_01825 0.83 +1.0
367,456 + CSW01_01825 0.84 +0.4
367,479 + CSW01_01825 0.85 +1.3
367,479 + CSW01_01825 0.85 +0.3
367,575 + CSW01_01825 0.90 -0.5
367,580 + -0.6
367,588 - -0.5
367,588 - +0.2
367,588 - +0.7
367,608 + +0.4
367,608 + +0.2
367,616 - -0.1
367,616 - -0.3
367,677 + +0.2
367,797 + +1.9
367,797 + +1.9
367,967 - CSW01_01830 0.21 +0.9
368,052 + CSW01_01830 0.30 +0.4
368,106 - CSW01_01830 0.35 +0.9
368,220 + CSW01_01830 0.47 -0.5
368,347 + CSW01_01830 0.61 -0.1
368,378 + CSW01_01830 0.64 +0.1
368,378 + CSW01_01830 0.64 +2.1
368,386 - CSW01_01830 0.65 +0.9
368,453 - CSW01_01830 0.72 +0.1
368,629 - -1.7
368,637 - -2.1
368,637 - -0.1
368,720 - +0.5

Or see this region's nucleotide sequence