Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01415

Experiment: LB_Aerobic_18HR_ZN18B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01405 and CSW01_01410 are separated by 0 nucleotidesCSW01_01410 and CSW01_01415 are separated by 99 nucleotidesCSW01_01415 and CSW01_01420 are separated by 58 nucleotides CSW01_01405: CSW01_01405 - DNA-binding protein HU-alpha, at 277,172 to 277,444 _01405 CSW01_01410: CSW01_01410 - DUF1481 domain-containing protein, at 277,445 to 278,179 _01410 CSW01_01415: CSW01_01415 - phosphoribosylamine--glycine ligase, at 278,279 to 279,568 _01415 CSW01_01420: CSW01_01420 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 279,627 to 281,219 _01420 Position (kb) 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 277.363 kb on + strand, within CSW01_01405at 277.416 kb on + strand, within CSW01_01405at 277.447 kb on + strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.460 kb on - strandat 277.553 kb on - strand, within CSW01_01410at 277.558 kb on + strand, within CSW01_01410at 277.571 kb on - strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.639 kb on - strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.666 kb on - strand, within CSW01_01410at 277.710 kb on + strand, within CSW01_01410at 277.727 kb on - strand, within CSW01_01410at 277.729 kb on - strand, within CSW01_01410at 277.741 kb on + strand, within CSW01_01410at 277.754 kb on + strand, within CSW01_01410at 277.810 kb on + strand, within CSW01_01410at 277.810 kb on + strand, within CSW01_01410at 277.818 kb on - strand, within CSW01_01410at 277.820 kb on - strand, within CSW01_01410at 277.853 kb on - strand, within CSW01_01410at 277.853 kb on - strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.948 kb on + strand, within CSW01_01410at 277.967 kb on + strand, within CSW01_01410at 277.975 kb on - strand, within CSW01_01410at 277.975 kb on - strand, within CSW01_01410at 277.982 kb on - strand, within CSW01_01410at 277.999 kb on + strand, within CSW01_01410at 278.029 kb on + strand, within CSW01_01410at 278.039 kb on + strand, within CSW01_01410at 278.047 kb on - strand, within CSW01_01410at 278.060 kb on + strand, within CSW01_01410at 278.139 kb on - strandat 278.141 kb on + strandat 278.151 kb on + strandat 278.338 kb on - strandat 278.383 kb on - strandat 278.394 kb on + strandat 278.394 kb on + strandat 278.394 kb on + strandat 278.399 kb on + strandat 278.402 kb on - strandat 278.407 kb on - strandat 278.420 kb on - strand, within CSW01_01415at 278.457 kb on + strand, within CSW01_01415at 278.539 kb on + strand, within CSW01_01415at 278.567 kb on - strand, within CSW01_01415at 278.568 kb on + strand, within CSW01_01415at 278.608 kb on + strand, within CSW01_01415at 278.631 kb on + strand, within CSW01_01415at 278.631 kb on + strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.641 kb on + strand, within CSW01_01415at 278.705 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.767 kb on - strand, within CSW01_01415at 278.769 kb on + strand, within CSW01_01415at 278.769 kb on + strand, within CSW01_01415at 278.775 kb on + strand, within CSW01_01415at 278.811 kb on - strand, within CSW01_01415at 278.848 kb on + strand, within CSW01_01415at 278.877 kb on + strand, within CSW01_01415at 278.891 kb on + strand, within CSW01_01415at 278.899 kb on - strand, within CSW01_01415at 278.912 kb on + strand, within CSW01_01415at 278.912 kb on + strand, within CSW01_01415at 278.920 kb on - strand, within CSW01_01415at 278.920 kb on - strand, within CSW01_01415at 279.016 kb on + strand, within CSW01_01415at 279.100 kb on + strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.173 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.221 kb on + strand, within CSW01_01415at 279.221 kb on - strand, within CSW01_01415at 279.227 kb on - strand, within CSW01_01415at 279.253 kb on + strand, within CSW01_01415at 279.266 kb on + strand, within CSW01_01415at 279.278 kb on + strand, within CSW01_01415at 279.286 kb on - strand, within CSW01_01415at 279.286 kb on - strand, within CSW01_01415at 279.338 kb on + strand, within CSW01_01415at 279.360 kb on + strand, within CSW01_01415at 279.378 kb on + strand, within CSW01_01415at 279.442 kb on - strandat 279.483 kb on + strandat 279.497 kb on - strandat 279.578 kb on - strandat 279.607 kb on + strandat 279.672 kb on - strandat 279.695 kb on + strandat 279.703 kb on - strandat 279.703 kb on - strandat 279.703 kb on - strandat 279.725 kb on + strandat 279.743 kb on - strandat 279.757 kb on + strandat 279.763 kb on - strandat 279.765 kb on - strandat 279.805 kb on - strand, within CSW01_01420at 279.859 kb on + strand, within CSW01_01420at 279.868 kb on - strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.881 kb on - strand, within CSW01_01420at 279.881 kb on - strand, within CSW01_01420at 279.960 kb on + strand, within CSW01_01420at 279.960 kb on + strand, within CSW01_01420at 279.965 kb on + strand, within CSW01_01420at 279.968 kb on - strand, within CSW01_01420at 280.000 kb on - strand, within CSW01_01420at 280.035 kb on + strand, within CSW01_01420at 280.062 kb on + strand, within CSW01_01420at 280.070 kb on - strand, within CSW01_01420at 280.201 kb on - strand, within CSW01_01420at 280.290 kb on - strand, within CSW01_01420at 280.302 kb on + strand, within CSW01_01420at 280.327 kb on - strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.339 kb on + strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.347 kb on - strand, within CSW01_01420at 280.347 kb on - strand, within CSW01_01420at 280.388 kb on - strand, within CSW01_01420at 280.398 kb on + strand, within CSW01_01420at 280.406 kb on - strand, within CSW01_01420at 280.406 kb on - strand, within CSW01_01420at 280.506 kb on - strand, within CSW01_01420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
remove
277,363 + CSW01_01405 0.70 +0.8
277,416 + CSW01_01405 0.89 +0.1
277,447 + -0.3
277,455 - -1.1
277,455 - -0.1
277,455 - +0.6
277,455 - +0.1
277,460 - +1.4
277,553 - CSW01_01410 0.15 +1.0
277,558 + CSW01_01410 0.15 +0.0
277,571 - CSW01_01410 0.17 +0.2
277,631 + CSW01_01410 0.25 +0.2
277,631 + CSW01_01410 0.25 +0.3
277,631 + CSW01_01410 0.25 -0.1
277,639 - CSW01_01410 0.26 +1.1
277,658 + CSW01_01410 0.29 -0.1
277,658 + CSW01_01410 0.29 +0.3
277,658 + CSW01_01410 0.29 +0.5
277,658 + CSW01_01410 0.29 +0.7
277,658 + CSW01_01410 0.29 +0.0
277,666 - CSW01_01410 0.30 +0.4
277,710 + CSW01_01410 0.36 +0.3
277,727 - CSW01_01410 0.38 +0.5
277,729 - CSW01_01410 0.39 +0.2
277,741 + CSW01_01410 0.40 -0.0
277,754 + CSW01_01410 0.42 -0.6
277,810 + CSW01_01410 0.50 -0.0
277,810 + CSW01_01410 0.50 +1.1
277,818 - CSW01_01410 0.51 +0.1
277,820 - CSW01_01410 0.51 +0.2
277,853 - CSW01_01410 0.56 -0.3
277,853 - CSW01_01410 0.56 -0.7
277,938 + CSW01_01410 0.67 +0.9
277,938 + CSW01_01410 0.67 +2.5
277,938 + CSW01_01410 0.67 -0.2
277,938 + CSW01_01410 0.67 -0.1
277,946 - CSW01_01410 0.68 +1.0
277,946 - CSW01_01410 0.68 +0.9
277,946 - CSW01_01410 0.68 +0.2
277,946 - CSW01_01410 0.68 -0.1
277,946 - CSW01_01410 0.68 +0.4
277,948 + CSW01_01410 0.68 -0.4
277,967 + CSW01_01410 0.71 -0.5
277,975 - CSW01_01410 0.72 -0.4
277,975 - CSW01_01410 0.72 +0.1
277,982 - CSW01_01410 0.73 +0.6
277,999 + CSW01_01410 0.75 -0.3
278,029 + CSW01_01410 0.79 -0.7
278,039 + CSW01_01410 0.81 +0.1
278,047 - CSW01_01410 0.82 +0.3
278,060 + CSW01_01410 0.84 +0.7
278,139 - +0.9
278,141 + -0.3
278,151 + -0.2
278,338 - -0.9
278,383 - +0.2
278,394 + -0.5
278,394 + +0.0
278,394 + +0.9
278,399 + -1.1
278,402 - -0.2
278,407 - -0.3
278,420 - CSW01_01415 0.11 +1.4
278,457 + CSW01_01415 0.14 -1.3
278,539 + CSW01_01415 0.20 +1.2
278,567 - CSW01_01415 0.22 -0.4
278,568 + CSW01_01415 0.22 -0.6
278,608 + CSW01_01415 0.26 -0.8
278,631 + CSW01_01415 0.27 +0.4
278,631 + CSW01_01415 0.27 -0.7
278,639 - CSW01_01415 0.28 +0.3
278,639 - CSW01_01415 0.28 -0.8
278,639 - CSW01_01415 0.28 -1.3
278,641 + CSW01_01415 0.28 -0.5
278,705 + CSW01_01415 0.33 -0.0
278,759 + CSW01_01415 0.37 -0.0
278,759 + CSW01_01415 0.37 +0.0
278,759 + CSW01_01415 0.37 -2.0
278,759 + CSW01_01415 0.37 +0.0
278,759 + CSW01_01415 0.37 +0.0
278,767 - CSW01_01415 0.38 +0.3
278,769 + CSW01_01415 0.38 -0.2
278,769 + CSW01_01415 0.38 +0.3
278,775 + CSW01_01415 0.38 -0.1
278,811 - CSW01_01415 0.41 -0.8
278,848 + CSW01_01415 0.44 -0.4
278,877 + CSW01_01415 0.46 +0.5
278,891 + CSW01_01415 0.47 -0.1
278,899 - CSW01_01415 0.48 -0.5
278,912 + CSW01_01415 0.49 -0.5
278,912 + CSW01_01415 0.49 +1.2
278,920 - CSW01_01415 0.50 +0.1
278,920 - CSW01_01415 0.50 -1.9
279,016 + CSW01_01415 0.57 +1.3
279,100 + CSW01_01415 0.64 -0.6
279,126 - CSW01_01415 0.66 +0.4
279,126 - CSW01_01415 0.66 -1.0
279,126 - CSW01_01415 0.66 -1.3
279,126 - CSW01_01415 0.66 +1.9
279,173 - CSW01_01415 0.69 -0.4
279,178 - CSW01_01415 0.70 -0.2
279,178 - CSW01_01415 0.70 +0.1
279,178 - CSW01_01415 0.70 +1.4
279,221 + CSW01_01415 0.73 -0.4
279,221 - CSW01_01415 0.73 -1.1
279,227 - CSW01_01415 0.73 -2.4
279,253 + CSW01_01415 0.76 +0.0
279,266 + CSW01_01415 0.77 +0.3
279,278 + CSW01_01415 0.77 -0.6
279,286 - CSW01_01415 0.78 -1.4
279,286 - CSW01_01415 0.78 -0.6
279,338 + CSW01_01415 0.82 +1.2
279,360 + CSW01_01415 0.84 +0.6
279,378 + CSW01_01415 0.85 -0.1
279,442 - +1.9
279,483 + -0.5
279,497 - -0.1
279,578 - +0.3
279,607 + -1.5
279,672 - -0.7
279,695 + +0.6
279,703 - -0.0
279,703 - -0.5
279,703 - -0.4
279,725 + -0.3
279,743 - -1.8
279,757 + +0.1
279,763 - -0.6
279,765 - -1.5
279,805 - CSW01_01420 0.11 -2.2
279,859 + CSW01_01420 0.15 -0.5
279,868 - CSW01_01420 0.15 -0.5
279,873 + CSW01_01420 0.15 +0.3
279,873 + CSW01_01420 0.15 -1.1
279,873 + CSW01_01420 0.15 -0.2
279,873 + CSW01_01420 0.15 -0.5
279,881 - CSW01_01420 0.16 +0.1
279,881 - CSW01_01420 0.16 -0.6
279,960 + CSW01_01420 0.21 +0.2
279,960 + CSW01_01420 0.21 +0.3
279,965 + CSW01_01420 0.21 -0.1
279,968 - CSW01_01420 0.21 -0.6
280,000 - CSW01_01420 0.23 -1.9
280,035 + CSW01_01420 0.26 -1.4
280,062 + CSW01_01420 0.27 -0.1
280,070 - CSW01_01420 0.28 -0.4
280,201 - CSW01_01420 0.36 -0.1
280,290 - CSW01_01420 0.42 +0.2
280,302 + CSW01_01420 0.42 +0.4
280,327 - CSW01_01420 0.44 -0.5
280,331 + CSW01_01420 0.44 -0.5
280,331 + CSW01_01420 0.44 +1.2
280,331 + CSW01_01420 0.44 -1.9
280,339 + CSW01_01420 0.45 -0.9
280,339 - CSW01_01420 0.45 -0.0
280,339 - CSW01_01420 0.45 +0.3
280,339 - CSW01_01420 0.45 -0.7
280,347 - CSW01_01420 0.45 +0.0
280,347 - CSW01_01420 0.45 -0.5
280,388 - CSW01_01420 0.48 -0.4
280,398 + CSW01_01420 0.48 -0.2
280,406 - CSW01_01420 0.49 +0.8
280,406 - CSW01_01420 0.49 -0.4
280,506 - CSW01_01420 0.55 -1.4

Or see this region's nucleotide sequence