Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00265

Experiment: LB_Aerobic_18HR_ZN18B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Aerobic_18HR_ZN18B
48,461	-		CSW01_00260	0.12	+0.2
48,473	-		CSW01_00260	0.13	+0.3
48,480	-		CSW01_00260	0.14	-2.9
48,508	+		CSW01_00260	0.16	-0.3
48,533	-		CSW01_00260	0.18	+0.1
48,550	-		CSW01_00260	0.20	+1.6
48,577	+		CSW01_00260	0.22	+0.2
48,580	-		CSW01_00260	0.23	+0.7
48,582	+		CSW01_00260	0.23	+0.2
48,585	-		CSW01_00260	0.23	+0.0
48,585	-		CSW01_00260	0.23	-0.3
48,590	-		CSW01_00260	0.23	-0.5
48,594	+		CSW01_00260	0.24	+0.3
48,594	+		CSW01_00260	0.24	-0.1
48,594	+		CSW01_00260	0.24	-0.5
48,594	+		CSW01_00260	0.24	-0.4
48,594	+		CSW01_00260	0.24	-0.9
48,594	+		CSW01_00260	0.24	-1.1
48,594	+		CSW01_00260	0.24	-0.5
48,594	+		CSW01_00260	0.24	+1.4
48,594	+		CSW01_00260	0.24	-0.4
48,594	+		CSW01_00260	0.24	-1.7
48,594	+		CSW01_00260	0.24	+1.3
48,594	+		CSW01_00260	0.24	+1.1
48,594	+		CSW01_00260	0.24	-0.4
48,594	+		CSW01_00260	0.24	+0.6
48,594	+		CSW01_00260	0.24	-0.5
48,594	+		CSW01_00260	0.24	+0.7
48,594	+		CSW01_00260	0.24	-0.2
48,594	+		CSW01_00260	0.24	-0.2
48,594	+		CSW01_00260	0.24	+0.3
48,600	-		CSW01_00260	0.24	+0.6
48,602	-		CSW01_00260	0.25	-0.2
48,602	-		CSW01_00260	0.25	-0.3
48,602	-		CSW01_00260	0.25	+0.8
48,602	-		CSW01_00260	0.25	-0.6
48,602	-		CSW01_00260	0.25	+0.9
48,602	-		CSW01_00260	0.25	+0.1
48,602	-		CSW01_00260	0.25	-0.1
48,602	-		CSW01_00260	0.25	-0.3
48,602	-		CSW01_00260	0.25	+0.6
48,602	-		CSW01_00260	0.25	-0.1
48,602	-		CSW01_00260	0.25	+0.4
48,602	-		CSW01_00260	0.25	+0.1
48,602	-		CSW01_00260	0.25	+0.7
48,602	-		CSW01_00260	0.25	-0.9
48,602	-		CSW01_00260	0.25	+0.7
48,602	-		CSW01_00260	0.25	+0.3
48,602	-		CSW01_00260	0.25	-1.4
48,602	-		CSW01_00260	0.25	+0.3
48,602	-		CSW01_00260	0.25	+0.3
48,602	-		CSW01_00260	0.25	+0.6
48,710	-		CSW01_00260	0.34	+0.4
48,710	-		CSW01_00260	0.34	-0.2
48,710	-		CSW01_00260	0.34	-0.0
48,710	-		CSW01_00260	0.34	-0.6
48,728	-		CSW01_00260	0.36	+0.8
48,763	+		CSW01_00260	0.39	-0.1
48,771	-		CSW01_00260	0.39	-1.0
48,822	+		CSW01_00260	0.44	+1.3
48,822	+		CSW01_00260	0.44	+0.0
48,830	-		CSW01_00260	0.45	-0.9
48,830	-		CSW01_00260	0.45	-0.3
48,830	-		CSW01_00260	0.45	+0.1
48,830	-		CSW01_00260	0.45	+0.1
48,830	-		CSW01_00260	0.45	-0.4
48,840	-		CSW01_00260	0.46	+1.2
48,846	-		CSW01_00260	0.46	-0.2
48,854	-		CSW01_00260	0.47	+0.6
48,854	-		CSW01_00260	0.47	-0.3
48,859	+		CSW01_00260	0.47	-1.1
48,864	+		CSW01_00260	0.48	+0.6
48,864	+		CSW01_00260	0.48	+0.1
48,866	+		CSW01_00260	0.48	-0.6
48,891	-		CSW01_00260	0.50	-0.9
48,902	+		CSW01_00260	0.51	+1.0
48,908	-		CSW01_00260	0.51	+0.5
48,972	-		CSW01_00260	0.57	-0.3
49,004	+		CSW01_00260	0.60	-0.3
49,017	-		CSW01_00260	0.61	-0.5
49,023	+		CSW01_00260	0.62	+0.2
49,023	+		CSW01_00260	0.62	-0.6
49,023	+		CSW01_00260	0.62	+0.3
49,031	-		CSW01_00260	0.62	+0.4
49,031	-		CSW01_00260	0.62	-0.3
49,044	+		CSW01_00260	0.63	+0.1
49,044	+		CSW01_00260	0.63	-0.5
49,059	+		CSW01_00260	0.65	-0.8
49,067	+		CSW01_00260	0.66	+0.5
49,074	-		CSW01_00260	0.66	+0.5
49,098	+		CSW01_00260	0.68	-0.8
49,116	+		CSW01_00260	0.70	+0.5
49,133	-		CSW01_00260	0.71	-0.9
49,135	+		CSW01_00260	0.72	-1.2
49,172	-		CSW01_00260	0.75	-2.2
49,210	-		CSW01_00260	0.78	+0.7
49,210	-		CSW01_00260	0.78	-0.6
49,220	+		CSW01_00260	0.79	-0.1
49,220	+		CSW01_00260	0.79	-0.2
49,239	+		CSW01_00260	0.81	+0.0
49,308	+		CSW01_00260	0.87	-0.6
49,316	-		CSW01_00260	0.87	-0.4
49,316	-		CSW01_00260	0.87	+1.1
49,325	+		CSW01_00260	0.88	-0.2
49,336	+		CSW01_00260	0.89	-0.2
49,342	-		CSW01_00260	0.90	-0.8
49,344	-				-1.0
49,367	+				+1.2
49,375	-				+0.2
49,375	-				-1.8
49,375	-				+0.5
49,375	-				+0.5
49,389	+				-0.2
49,397	+				+1.0
49,430	+				+0.1
49,438	-				-0.0
49,485	+				-0.5
49,485	+				-0.7
49,493	-				+0.8
49,493	-				-0.5
49,493	-				+0.1
49,493	-				-1.6
49,495	+				-0.2
49,495	+				-0.3
49,505	+				-0.9
49,508	-				+1.0
49,538	+		CSW01_00265	0.16	+0.4
49,538	-		CSW01_00265	0.16	+2.0
49,572	+		CSW01_00265	0.23	+0.7
49,572	+		CSW01_00265	0.23	-0.0
49,596	+		CSW01_00265	0.28	-0.5
49,596	+		CSW01_00265	0.28	-0.3
49,604	-		CSW01_00265	0.29	-0.8
49,643	+		CSW01_00265	0.37	-0.1
49,654	-		CSW01_00265	0.40	-0.2
49,666	+		CSW01_00265	0.42	-0.6
49,666	+		CSW01_00265	0.42	-0.6
49,666	+		CSW01_00265	0.42	-0.6
49,674	-		CSW01_00265	0.44	-0.6
49,698	+		CSW01_00265	0.49	-0.9
49,698	+		CSW01_00265	0.49	-0.6
49,698	+		CSW01_00265	0.49	+0.9
49,705	-		CSW01_00265	0.50	-0.7
49,705	-		CSW01_00265	0.50	+1.0
49,706	-		CSW01_00265	0.50	-0.9
49,706	-		CSW01_00265	0.50	-0.3
49,706	-		CSW01_00265	0.50	-0.3
49,768	-		CSW01_00265	0.63	-0.9
49,775	+		CSW01_00265	0.65	-0.6
49,775	+		CSW01_00265	0.65	-0.8
49,775	+		CSW01_00265	0.65	-1.5
49,775	+		CSW01_00265	0.65	+0.2
49,775	+		CSW01_00265	0.65	+0.6
49,783	-		CSW01_00265	0.66	-0.2
49,802	+		CSW01_00265	0.70	-0.9
49,828	-		CSW01_00265	0.76	+1.1
49,847	+		CSW01_00265	0.79	-1.0
49,855	-		CSW01_00265	0.81	+0.5
49,873	-		CSW01_00265	0.85	-1.4
49,874	+		CSW01_00265	0.85	-0.2
49,883	+		CSW01_00265	0.87	-1.1
49,889	-		CSW01_00265	0.88	-1.5
49,895	+		CSW01_00265	0.89	-0.6
49,903	-				-0.2
49,903	-				-0.3
49,951	+				+0.5
49,959	-				+0.3
49,961	+				-0.8
49,969	-				+0.7
49,969	-				+0.1
50,061	-				+1.2
50,075	+				+0.3
50,083	-				+3.0
50,083	-				+0.8
50,083	-				-0.1
50,085	+				+0.5
50,110	+				+1.1
50,128	-				+1.8
50,128	-				+0.5
50,128	-				-0.3
50,145	+				+0.1
50,145	+				+0.5
50,145	+				+1.4
50,145	+				-0.3
50,145	+				-0.3
50,148	-				-1.1
50,153	-				+0.7
50,153	-				+0.3
50,192	-		CSW01_00270	0.16	-0.3
50,216	+		CSW01_00270	0.20	+0.4
50,221	+		CSW01_00270	0.21	+0.6
50,221	+		CSW01_00270	0.21	+0.0
50,224	-		CSW01_00270	0.21	+0.2
50,229	-		CSW01_00270	0.22	-0.4
50,229	-		CSW01_00270	0.22	-0.1
50,301	-		CSW01_00270	0.35	-0.0
50,361	+		CSW01_00270	0.45	+0.3
50,373	+		CSW01_00270	0.47	+0.4
50,373	+		CSW01_00270	0.47	+0.7
50,376	-		CSW01_00270	0.48	+0.5
50,376	-		CSW01_00270	0.48	+0.4
50,381	-		CSW01_00270	0.49	+0.8
50,381	-		CSW01_00270	0.49	-0.7
50,381	-		CSW01_00270	0.49	-0.0
50,381	-		CSW01_00270	0.49	-0.4
50,396	+		CSW01_00270	0.51	+0.3
50,416	-		CSW01_00270	0.55	+0.3
50,424	+		CSW01_00270	0.56	+0.4
50,432	+		CSW01_00270	0.58	+0.3
50,432	-		CSW01_00270	0.58	+1.2
50,432	-		CSW01_00270	0.58	-0.7
50,445	-		CSW01_00270	0.60	+1.2
50,476	+		CSW01_00270	0.66	-0.7
50,480	-		CSW01_00270	0.66	-0.7
50,505	+		CSW01_00270	0.71	+1.1
50,510	+		CSW01_00270	0.72	+0.2
50,510	+		CSW01_00270	0.72	-1.7
50,510	+		CSW01_00270	0.72	-0.7
50,510	+		CSW01_00270	0.72	+0.6
50,518	-		CSW01_00270	0.73	+0.7
50,518	-		CSW01_00270	0.73	+0.5
50,518	-		CSW01_00270	0.73	+0.2
50,518	-		CSW01_00270	0.73	+0.2
50,518	-		CSW01_00270	0.73	+0.0
50,518	-		CSW01_00270	0.73	+0.5
50,518	-		CSW01_00270	0.73	+0.7
50,518	-		CSW01_00270	0.73	+1.7
50,523	-		CSW01_00270	0.74	-0.3
50,537	-		CSW01_00270	0.76	+0.6
50,596	+		CSW01_00270	0.87	+0.4
50,612	+		CSW01_00270	0.90	+0.6
50,645	+				-0.4
50,645	+				-0.1
50,653	+				+0.8
50,653	-				+0.3
50,653	-				+1.6
50,653	-				+0.6
50,654	+				+0.5
50,662	-				+0.1
50,662	-				+0.2
50,662	-				+0.0
50,664	+				+0.3
50,665	+				+0.2
50,665	+				+0.5
50,665	+				+0.1
50,665	+				+0.3
50,665	+				+0.6
50,665	+				-1.9
50,665	+				+0.2
50,665	+				-0.3
50,673	-				+0.1
50,673	-				-0.9
50,673	-				+1.0
50,673	-				+0.1
50,673	-				+1.1
50,673	-				+0.5
50,673	-				+0.9
50,673	-				+0.4
50,673	-				+0.8
50,673	-				+0.3
50,678	-				+0.5
50,683	-				+0.8
50,683	-				+0.7