Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00165

Experiment: LB_Aerobic_18HR_ZN18B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00160 and CSW01_00165 are separated by 89 nucleotidesCSW01_00165 and CSW01_00170 are separated by 77 nucleotidesCSW01_00170 and CSW01_00175 are separated by 30 nucleotides CSW01_00160: CSW01_00160 - ATP-dependent protease, at 30,069 to 31,592 _00160 CSW01_00165: CSW01_00165 - acyltransferase, at 31,682 to 32,566 _00165 CSW01_00170: CSW01_00170 - thiol:disulfide interchange protein DsbA, at 32,644 to 33,246 _00170 CSW01_00175: CSW01_00175 - serine/threonine protein kinase, at 33,277 to 34,263 _00175 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.751 kb on + strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.759 kb on - strand, within CSW01_00160at 30.764 kb on - strand, within CSW01_00160at 30.820 kb on + strand, within CSW01_00160at 30.820 kb on + strand, within CSW01_00160at 30.820 kb on + strand, within CSW01_00160at 30.828 kb on - strand, within CSW01_00160at 30.830 kb on + strand, within CSW01_00160at 30.835 kb on + strand, within CSW01_00160at 30.911 kb on + strand, within CSW01_00160at 30.916 kb on + strand, within CSW01_00160at 31.067 kb on - strand, within CSW01_00160at 31.133 kb on - strand, within CSW01_00160at 31.134 kb on + strand, within CSW01_00160at 31.135 kb on + strand, within CSW01_00160at 31.179 kb on - strand, within CSW01_00160at 31.202 kb on - strand, within CSW01_00160at 31.243 kb on - strand, within CSW01_00160at 31.243 kb on - strand, within CSW01_00160at 31.243 kb on - strand, within CSW01_00160at 31.250 kb on + strand, within CSW01_00160at 31.298 kb on + strand, within CSW01_00160at 31.304 kb on + strand, within CSW01_00160at 31.306 kb on - strand, within CSW01_00160at 31.306 kb on - strand, within CSW01_00160at 31.306 kb on - strand, within CSW01_00160at 31.334 kb on + strand, within CSW01_00160at 31.348 kb on - strand, within CSW01_00160at 31.376 kb on + strand, within CSW01_00160at 31.376 kb on + strand, within CSW01_00160at 31.376 kb on + strand, within CSW01_00160at 31.376 kb on + strand, within CSW01_00160at 31.376 kb on + strand, within CSW01_00160at 31.384 kb on - strand, within CSW01_00160at 31.384 kb on - strand, within CSW01_00160at 31.384 kb on - strand, within CSW01_00160at 31.388 kb on + strand, within CSW01_00160at 31.463 kb on + strandat 31.506 kb on - strandat 31.506 kb on - strandat 31.533 kb on + strandat 31.579 kb on - strandat 31.587 kb on + strandat 31.593 kb on - strandat 31.594 kb on + strandat 31.594 kb on + strandat 31.594 kb on + strandat 31.594 kb on + strandat 31.595 kb on - strandat 31.595 kb on - strandat 31.597 kb on - strandat 31.602 kb on - strandat 31.602 kb on - strandat 31.602 kb on - strandat 31.602 kb on - strandat 31.607 kb on - strandat 31.607 kb on - strandat 31.617 kb on - strandat 31.665 kb on + strandat 31.665 kb on + strandat 31.673 kb on - strandat 31.705 kb on - strandat 31.708 kb on + strandat 31.712 kb on - strandat 31.716 kb on - strandat 31.779 kb on - strand, within CSW01_00165at 31.786 kb on + strand, within CSW01_00165at 31.786 kb on + strand, within CSW01_00165at 31.794 kb on - strand, within CSW01_00165at 31.805 kb on + strand, within CSW01_00165at 31.813 kb on - strand, within CSW01_00165at 31.847 kb on - strand, within CSW01_00165at 31.847 kb on - strand, within CSW01_00165at 31.858 kb on + strand, within CSW01_00165at 31.908 kb on + strand, within CSW01_00165at 31.916 kb on - strand, within CSW01_00165at 31.916 kb on - strand, within CSW01_00165at 31.925 kb on - strand, within CSW01_00165at 31.986 kb on - strand, within CSW01_00165at 32.007 kb on - strand, within CSW01_00165at 32.057 kb on + strand, within CSW01_00165at 32.075 kb on - strand, within CSW01_00165at 32.080 kb on - strand, within CSW01_00165at 32.117 kb on - strand, within CSW01_00165at 32.122 kb on - strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.194 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.222 kb on + strand, within CSW01_00165at 32.245 kb on + strand, within CSW01_00165at 32.286 kb on - strand, within CSW01_00165at 32.324 kb on - strand, within CSW01_00165at 32.348 kb on + strand, within CSW01_00165at 32.358 kb on + strand, within CSW01_00165at 32.375 kb on - strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.417 kb on + strand, within CSW01_00165at 32.452 kb on + strand, within CSW01_00165at 32.480 kb on - strandat 32.490 kb on - strandat 32.509 kb on + strandat 32.514 kb on + strandat 32.514 kb on + strandat 32.522 kb on - strandat 32.531 kb on + strandat 32.531 kb on + strandat 32.532 kb on - strandat 32.532 kb on - strandat 32.592 kb on - strandat 32.637 kb on + strandat 32.702 kb on + strandat 32.815 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.904 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.907 kb on - strand, within CSW01_00170at 32.914 kb on - strand, within CSW01_00170at 33.006 kb on - strand, within CSW01_00170at 33.078 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.094 kb on - strand, within CSW01_00170at 33.098 kb on + strand, within CSW01_00170at 33.145 kb on - strand, within CSW01_00170at 33.189 kb on - strandat 33.196 kb on + strandat 33.204 kb on - strandat 33.211 kb on + strandat 33.218 kb on + strandat 33.218 kb on + strandat 33.219 kb on - strandat 33.269 kb on + strandat 33.275 kb on + strandat 33.317 kb on + strandat 33.330 kb on + strandat 33.330 kb on - strandat 33.405 kb on - strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.488 kb on - strand, within CSW01_00175at 33.501 kb on + strand, within CSW01_00175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_18HR_ZN18B
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30,751 + CSW01_00160 0.45 +0.7
30,751 + CSW01_00160 0.45 +0.7
30,751 + CSW01_00160 0.45 +0.2
30,751 + CSW01_00160 0.45 -0.1
30,751 + CSW01_00160 0.45 +0.2
30,751 + CSW01_00160 0.45 +1.1
30,751 + CSW01_00160 0.45 -0.1
30,751 + CSW01_00160 0.45 +0.6
30,751 + CSW01_00160 0.45 +0.7
30,759 - CSW01_00160 0.45 +0.1
30,759 - CSW01_00160 0.45 +0.0
30,759 - CSW01_00160 0.45 +0.3
30,759 - CSW01_00160 0.45 +0.8
30,759 - CSW01_00160 0.45 +0.1
30,759 - CSW01_00160 0.45 +0.7
30,759 - CSW01_00160 0.45 -1.3
30,759 - CSW01_00160 0.45 -0.6
30,759 - CSW01_00160 0.45 +0.7
30,759 - CSW01_00160 0.45 -0.2
30,759 - CSW01_00160 0.45 +0.1
30,759 - CSW01_00160 0.45 +0.4
30,759 - CSW01_00160 0.45 +0.1
30,764 - CSW01_00160 0.46 +0.7
30,820 + CSW01_00160 0.49 -0.2
30,820 + CSW01_00160 0.49 +0.1
30,820 + CSW01_00160 0.49 +0.5
30,828 - CSW01_00160 0.50 +0.8
30,830 + CSW01_00160 0.50 +0.0
30,835 + CSW01_00160 0.50 +0.7
30,911 + CSW01_00160 0.55 +0.9
30,916 + CSW01_00160 0.56 +0.5
31,067 - CSW01_00160 0.65 +0.7
31,133 - CSW01_00160 0.70 +0.3
31,134 + CSW01_00160 0.70 +0.5
31,135 + CSW01_00160 0.70 +0.4
31,179 - CSW01_00160 0.73 +1.1
31,202 - CSW01_00160 0.74 +0.1
31,243 - CSW01_00160 0.77 -0.7
31,243 - CSW01_00160 0.77 -0.4
31,243 - CSW01_00160 0.77 +0.7
31,250 + CSW01_00160 0.77 +1.3
31,298 + CSW01_00160 0.81 +0.7
31,304 + CSW01_00160 0.81 -0.3
31,306 - CSW01_00160 0.81 +0.0
31,306 - CSW01_00160 0.81 -1.1
31,306 - CSW01_00160 0.81 +0.2
31,334 + CSW01_00160 0.83 +0.5
31,348 - CSW01_00160 0.84 +1.2
31,376 + CSW01_00160 0.86 +0.0
31,376 + CSW01_00160 0.86 +0.4
31,376 + CSW01_00160 0.86 +0.2
31,376 + CSW01_00160 0.86 -0.3
31,376 + CSW01_00160 0.86 +0.2
31,384 - CSW01_00160 0.86 +0.4
31,384 - CSW01_00160 0.86 +0.5
31,384 - CSW01_00160 0.86 +0.6
31,388 + CSW01_00160 0.87 +1.0
31,463 + +0.1
31,506 - +0.6
31,506 - +0.2
31,533 + +0.3
31,579 - -0.8
31,587 + +0.4
31,593 - +0.3
31,594 + -1.4
31,594 + -0.3
31,594 + +1.1
31,594 + -0.3
31,595 - -0.1
31,595 - -0.5
31,597 - +0.4
31,602 - +0.6
31,602 - +0.0
31,602 - +0.6
31,602 - -0.1
31,607 - -0.4
31,607 - +0.0
31,617 - -0.2
31,665 + +1.2
31,665 + +0.0
31,673 - +1.2
31,705 - -0.1
31,708 + -0.2
31,712 - +0.1
31,716 - +0.8
31,779 - CSW01_00165 0.11 +0.2
31,786 + CSW01_00165 0.12 +0.4
31,786 + CSW01_00165 0.12 +1.2
31,794 - CSW01_00165 0.13 +0.3
31,805 + CSW01_00165 0.14 +0.2
31,813 - CSW01_00165 0.15 -1.2
31,847 - CSW01_00165 0.19 +0.3
31,847 - CSW01_00165 0.19 +0.3
31,858 + CSW01_00165 0.20 -0.9
31,908 + CSW01_00165 0.26 +0.2
31,916 - CSW01_00165 0.26 -0.0
31,916 - CSW01_00165 0.26 +1.0
31,925 - CSW01_00165 0.27 +0.4
31,986 - CSW01_00165 0.34 +2.1
32,007 - CSW01_00165 0.37 +0.6
32,057 + CSW01_00165 0.42 +0.8
32,075 - CSW01_00165 0.44 +0.3
32,080 - CSW01_00165 0.45 +0.3
32,117 - CSW01_00165 0.49 -2.7
32,122 - CSW01_00165 0.50 -0.1
32,186 + CSW01_00165 0.57 +1.2
32,186 + CSW01_00165 0.57 +0.5
32,186 + CSW01_00165 0.57 -0.1
32,194 - CSW01_00165 0.58 -0.3
32,206 - CSW01_00165 0.59 +0.5
32,206 - CSW01_00165 0.59 +1.0
32,206 - CSW01_00165 0.59 -0.0
32,206 - CSW01_00165 0.59 +0.4
32,222 + CSW01_00165 0.61 +0.7
32,245 + CSW01_00165 0.64 +1.7
32,286 - CSW01_00165 0.68 +0.6
32,324 - CSW01_00165 0.73 +0.0
32,348 + CSW01_00165 0.75 +0.6
32,358 + CSW01_00165 0.76 +0.5
32,375 - CSW01_00165 0.78 -0.6
32,400 + CSW01_00165 0.81 +0.3
32,400 + CSW01_00165 0.81 +0.1
32,400 + CSW01_00165 0.81 +1.5
32,400 + CSW01_00165 0.81 +0.6
32,400 + CSW01_00165 0.81 -0.3
32,400 + CSW01_00165 0.81 +0.2
32,408 - CSW01_00165 0.82 +1.0
32,408 - CSW01_00165 0.82 -0.8
32,408 - CSW01_00165 0.82 +0.3
32,408 - CSW01_00165 0.82 -0.6
32,408 - CSW01_00165 0.82 +0.9
32,408 - CSW01_00165 0.82 +0.6
32,408 - CSW01_00165 0.82 +1.2
32,417 + CSW01_00165 0.83 +0.2
32,452 + CSW01_00165 0.87 +0.2
32,480 - +0.7
32,490 - +0.4
32,509 + +1.7
32,514 + -0.5
32,514 + +0.3
32,522 - +0.3
32,531 + -1.9
32,531 + +0.4
32,532 - +0.5
32,532 - +0.2
32,592 - +0.6
32,637 + -0.2
32,702 + +0.6
32,815 + CSW01_00170 0.28 -0.0
32,894 + CSW01_00170 0.41 -0.5
32,894 + CSW01_00170 0.41 -0.4
32,894 + CSW01_00170 0.41 -1.0
32,904 + CSW01_00170 0.43 +1.7
32,906 + CSW01_00170 0.43 -0.6
32,906 + CSW01_00170 0.43 +0.2
32,906 + CSW01_00170 0.43 +1.4
32,906 + CSW01_00170 0.43 -0.2
32,906 + CSW01_00170 0.43 +2.0
32,907 - CSW01_00170 0.44 -0.4
32,914 - CSW01_00170 0.45 -0.4
33,006 - CSW01_00170 0.60 -1.4
33,078 + CSW01_00170 0.72 +0.5
33,086 + CSW01_00170 0.73 +0.2
33,086 + CSW01_00170 0.73 +0.2
33,086 - CSW01_00170 0.73 -0.1
33,086 - CSW01_00170 0.73 -1.0
33,086 - CSW01_00170 0.73 -0.6
33,094 - CSW01_00170 0.75 -0.7
33,098 + CSW01_00170 0.75 -0.1
33,145 - CSW01_00170 0.83 -0.2
33,189 - -0.2
33,196 + -0.9
33,204 - -0.4
33,211 + -1.7
33,218 + -0.2
33,218 + +0.4
33,219 - -1.3
33,269 + -0.1
33,275 + +0.1
33,317 + +0.9
33,330 + -1.1
33,330 - +0.0
33,405 - CSW01_00175 0.13 +0.6
33,433 + CSW01_00175 0.16 +0.7
33,433 + CSW01_00175 0.16 +0.3
33,433 + CSW01_00175 0.16 +0.0
33,433 + CSW01_00175 0.16 +0.1
33,488 - CSW01_00175 0.21 +0.1
33,501 + CSW01_00175 0.23 +0.0

Or see this region's nucleotide sequence