Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01935

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01925 and AO356_01930 are separated by 15 nucleotidesAO356_01930 and AO356_01935 overlap by 10 nucleotidesAO356_01935 and AO356_01940 are separated by 254 nucleotides AO356_01925: AO356_01925 - hypothetical protein, at 427,543 to 427,905 _01925 AO356_01930: AO356_01930 - hypothetical protein, at 427,921 to 428,799 _01930 AO356_01935: AO356_01935 - biotin synthase, at 428,790 to 430,010 _01935 AO356_01940: AO356_01940 - hypothetical protein, at 430,265 to 430,588 _01940 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -1 0 1 2at 427.795 kb on - strand, within AO356_01925at 427.901 kb on + strandat 427.902 kb on - strandat 427.922 kb on + strandat 427.922 kb on + strandat 427.922 kb on + strandat 427.922 kb on + strandat 427.946 kb on - strandat 427.975 kb on - strandat 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.156 kb on + strand, within AO356_01930at 428.159 kb on + strand, within AO356_01930at 428.160 kb on - strand, within AO356_01930at 428.160 kb on - strand, within AO356_01930at 428.160 kb on - strand, within AO356_01930at 428.160 kb on - strand, within AO356_01930at 428.160 kb on - strand, within AO356_01930at 428.549 kb on + strand, within AO356_01930at 428.549 kb on + strand, within AO356_01930at 428.549 kb on + strand, within AO356_01930at 428.550 kb on - strand, within AO356_01930at 428.550 kb on - strand, within AO356_01930at 428.550 kb on - strand, within AO356_01930at 428.947 kb on + strand, within AO356_01935at 428.993 kb on + strand, within AO356_01935at 428.994 kb on - strand, within AO356_01935at 429.014 kb on + strand, within AO356_01935at 429.149 kb on - strand, within AO356_01935at 429.182 kb on - strand, within AO356_01935at 429.262 kb on + strand, within AO356_01935at 429.262 kb on + strand, within AO356_01935at 429.265 kb on + strand, within AO356_01935at 429.265 kb on + strand, within AO356_01935at 429.265 kb on + strand, within AO356_01935at 429.266 kb on - strand, within AO356_01935at 429.266 kb on - strand, within AO356_01935at 429.322 kb on + strand, within AO356_01935at 429.556 kb on - strand, within AO356_01935at 429.590 kb on + strand, within AO356_01935at 429.592 kb on + strand, within AO356_01935at 429.592 kb on + strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.593 kb on - strand, within AO356_01935at 429.637 kb on - strand, within AO356_01935at 429.656 kb on - strand, within AO356_01935at 429.656 kb on - strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.796 kb on + strand, within AO356_01935at 429.809 kb on - strand, within AO356_01935at 429.809 kb on - strand, within AO356_01935at 429.866 kb on + strand, within AO356_01935at 429.867 kb on - strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.868 kb on + strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.869 kb on - strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.872 kb on + strand, within AO356_01935at 429.873 kb on - strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.881 kb on + strand, within AO356_01935at 429.882 kb on - strand, within AO356_01935at 429.882 kb on - strand, within AO356_01935at 429.926 kb on + strandat 429.926 kb on + strandat 429.926 kb on + strandat 429.926 kb on + strandat 429.927 kb on - strandat 429.927 kb on - strandat 429.964 kb on + strandat 429.965 kb on - strandat 430.001 kb on + strandat 430.034 kb on + strandat 430.117 kb on + strandat 430.117 kb on + strandat 430.117 kb on + strandat 430.140 kb on + strandat 430.140 kb on + strandat 430.140 kb on + strandat 430.141 kb on - strandat 430.142 kb on + strandat 430.210 kb on + strandat 430.211 kb on - strandat 430.211 kb on - strandat 430.237 kb on + strandat 430.238 kb on - strandat 430.534 kb on - strand, within AO356_01940at 430.534 kb on - strand, within AO356_01940at 430.626 kb on - strandat 430.636 kb on + strandat 430.637 kb on - strandat 430.637 kb on - strandat 430.654 kb on + strandat 430.654 kb on + strandat 430.655 kb on - strandat 430.754 kb on + strandat 430.840 kb on - strandat 430.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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427,795 - AO356_01925 0.69 +0.2
427,901 + +0.8
427,902 - +0.4
427,922 + +0.3
427,922 + +0.0
427,922 + +0.3
427,922 + -0.4
427,946 - +0.2
427,975 - +0.1
428,156 + AO356_01930 0.27 +0.4
428,156 + AO356_01930 0.27 +0.7
428,156 + AO356_01930 0.27 -0.7
428,156 + AO356_01930 0.27 -0.8
428,156 + AO356_01930 0.27 +0.4
428,156 + AO356_01930 0.27 +0.9
428,156 + AO356_01930 0.27 +0.5
428,156 + AO356_01930 0.27 +0.5
428,159 + AO356_01930 0.27 +0.1
428,160 - AO356_01930 0.27 -0.1
428,160 - AO356_01930 0.27 +1.2
428,160 - AO356_01930 0.27 +0.7
428,160 - AO356_01930 0.27 +1.0
428,160 - AO356_01930 0.27 -0.1
428,549 + AO356_01930 0.71 +1.0
428,549 + AO356_01930 0.71 +0.1
428,549 + AO356_01930 0.71 -1.2
428,550 - AO356_01930 0.72 +0.5
428,550 - AO356_01930 0.72 -0.1
428,550 - AO356_01930 0.72 -0.8
428,947 + AO356_01935 0.13 -0.0
428,993 + AO356_01935 0.17 +0.4
428,994 - AO356_01935 0.17 -0.5
429,014 + AO356_01935 0.18 +0.1
429,149 - AO356_01935 0.29 +0.1
429,182 - AO356_01935 0.32 +0.3
429,262 + AO356_01935 0.39 +0.4
429,262 + AO356_01935 0.39 +0.2
429,265 + AO356_01935 0.39 -0.5
429,265 + AO356_01935 0.39 -0.3
429,265 + AO356_01935 0.39 -0.9
429,266 - AO356_01935 0.39 +0.3
429,266 - AO356_01935 0.39 +0.2
429,322 + AO356_01935 0.44 -0.7
429,556 - AO356_01935 0.63 -0.1
429,590 + AO356_01935 0.66 +1.2
429,592 + AO356_01935 0.66 +0.3
429,592 + AO356_01935 0.66 +0.3
429,593 - AO356_01935 0.66 +0.3
429,593 - AO356_01935 0.66 +0.7
429,593 - AO356_01935 0.66 +0.3
429,593 - AO356_01935 0.66 +0.6
429,593 - AO356_01935 0.66 +0.5
429,593 - AO356_01935 0.66 +1.4
429,593 - AO356_01935 0.66 +0.6
429,637 - AO356_01935 0.69 +0.7
429,656 - AO356_01935 0.71 +0.3
429,656 - AO356_01935 0.71 -0.4
429,796 + AO356_01935 0.82 -0.0
429,796 + AO356_01935 0.82 -0.1
429,796 + AO356_01935 0.82 +0.2
429,809 - AO356_01935 0.83 +0.1
429,809 - AO356_01935 0.83 -0.0
429,866 + AO356_01935 0.88 +0.3
429,867 - AO356_01935 0.88 +0.1
429,868 + AO356_01935 0.88 -1.1
429,868 + AO356_01935 0.88 +0.3
429,868 + AO356_01935 0.88 +0.5
429,868 + AO356_01935 0.88 +0.6
429,868 + AO356_01935 0.88 +0.2
429,868 + AO356_01935 0.88 -0.9
429,868 + AO356_01935 0.88 +0.3
429,868 + AO356_01935 0.88 +0.5
429,868 + AO356_01935 0.88 -0.1
429,868 + AO356_01935 0.88 +0.2
429,868 + AO356_01935 0.88 +0.4
429,868 + AO356_01935 0.88 +2.2
429,868 + AO356_01935 0.88 -0.5
429,868 + AO356_01935 0.88 +0.5
429,868 + AO356_01935 0.88 +0.3
429,868 + AO356_01935 0.88 +0.2
429,869 - AO356_01935 0.88 +0.6
429,869 - AO356_01935 0.88 -0.5
429,869 - AO356_01935 0.88 -0.6
429,869 - AO356_01935 0.88 -1.1
429,869 - AO356_01935 0.88 +0.7
429,869 - AO356_01935 0.88 -0.4
429,869 - AO356_01935 0.88 +0.2
429,869 - AO356_01935 0.88 +0.7
429,869 - AO356_01935 0.88 +0.2
429,869 - AO356_01935 0.88 -0.5
429,869 - AO356_01935 0.88 -0.5
429,869 - AO356_01935 0.88 -0.1
429,869 - AO356_01935 0.88 +0.2
429,869 - AO356_01935 0.88 +0.3
429,869 - AO356_01935 0.88 -0.5
429,869 - AO356_01935 0.88 +2.2
429,869 - AO356_01935 0.88 +0.3
429,869 - AO356_01935 0.88 -0.8
429,872 + AO356_01935 0.89 +0.2
429,872 + AO356_01935 0.89 -1.2
429,872 + AO356_01935 0.89 -0.8
429,872 + AO356_01935 0.89 -0.2
429,873 - AO356_01935 0.89 +0.2
429,881 + AO356_01935 0.89 +0.5
429,881 + AO356_01935 0.89 +0.2
429,881 + AO356_01935 0.89 +0.9
429,882 - AO356_01935 0.89 -0.3
429,882 - AO356_01935 0.89 -1.0
429,926 + -0.4
429,926 + +0.3
429,926 + -0.6
429,926 + +0.1
429,927 - +0.4
429,927 - +0.4
429,964 + +0.4
429,965 - -0.8
430,001 + -0.3
430,034 + +0.5
430,117 + -1.1
430,117 + +0.8
430,117 + +1.7
430,140 + +0.3
430,140 + +0.1
430,140 + +0.2
430,141 - -0.9
430,142 + -0.3
430,210 + -0.5
430,211 - -0.1
430,211 - -0.3
430,237 + -0.3
430,238 - +1.3
430,534 - AO356_01940 0.83 -0.1
430,534 - AO356_01940 0.83 +1.7
430,626 - -0.2
430,636 + -1.1
430,637 - +0.7
430,637 - +0.3
430,654 + +0.1
430,654 + -0.5
430,655 - -1.7
430,754 + +0.5
430,840 - -0.1
430,840 - +1.2

Or see this region's nucleotide sequence