Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00390 and AO356_00395 overlap by 1 nucleotides AO356_00395 and AO356_00400 overlap by 1 nucleotides
AO356_00390: AO356_00390 - ABC transporter substrate-binding protein, at 76,849 to 78,717
_00390
AO356_00395: AO356_00395 - peptide ABC transporter permease, at 78,717 to 79,775
_00395
AO356_00400: AO356_00400 - ABC transporter permease, at 79,775 to 80,797
_00400
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1
2 at 77.911 kb on + strand, within AO356_00390 at 77.911 kb on + strand, within AO356_00390 at 77.911 kb on + strand, within AO356_00390 at 77.912 kb on - strand, within AO356_00390 at 77.912 kb on - strand, within AO356_00390 at 77.912 kb on - strand, within AO356_00390 at 77.912 kb on - strand, within AO356_00390 at 77.929 kb on + strand, within AO356_00390 at 77.929 kb on + strand, within AO356_00390 at 77.930 kb on - strand, within AO356_00390 at 78.217 kb on + strand, within AO356_00390 at 78.218 kb on - strand, within AO356_00390 at 78.225 kb on + strand, within AO356_00390 at 78.225 kb on + strand, within AO356_00390 at 78.226 kb on - strand, within AO356_00390 at 78.308 kb on - strand, within AO356_00390 at 78.361 kb on + strand, within AO356_00390 at 78.362 kb on - strand, within AO356_00390 at 78.362 kb on - strand, within AO356_00390 at 78.368 kb on - strand, within AO356_00390 at 78.368 kb on - strand, within AO356_00390 at 78.368 kb on - strand, within AO356_00390 at 78.368 kb on - strand, within AO356_00390 at 78.409 kb on + strand, within AO356_00390 at 78.410 kb on - strand, within AO356_00390 at 78.527 kb on - strand, within AO356_00390 at 78.529 kb on + strand, within AO356_00390 at 78.529 kb on + strand, within AO356_00390 at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.544 kb on + strand at 78.545 kb on - strand at 78.545 kb on - strand at 78.548 kb on - strand at 78.726 kb on + strand at 78.726 kb on + strand at 78.726 kb on + strand at 78.726 kb on + strand at 78.727 kb on - strand at 78.727 kb on - strand at 78.727 kb on - strand at 78.727 kb on - strand at 78.729 kb on - strand at 78.951 kb on + strand, within AO356_00395 at 78.951 kb on + strand, within AO356_00395 at 78.951 kb on + strand, within AO356_00395 at 78.952 kb on - strand, within AO356_00395 at 79.002 kb on + strand, within AO356_00395 at 79.003 kb on - strand, within AO356_00395 at 79.003 kb on - strand, within AO356_00395 at 79.003 kb on - strand, within AO356_00395 at 79.117 kb on - strand, within AO356_00395 at 79.449 kb on + strand, within AO356_00395 at 79.449 kb on + strand, within AO356_00395 at 79.450 kb on - strand, within AO356_00395 at 79.497 kb on + strand, within AO356_00395 at 79.498 kb on - strand, within AO356_00395 at 79.629 kb on + strand, within AO356_00395 at 79.728 kb on + strand at 79.728 kb on + strand at 79.926 kb on - strand, within AO356_00400 at 79.940 kb on + strand, within AO356_00400 at 80.018 kb on + strand, within AO356_00400 at 80.018 kb on + strand, within AO356_00400 at 80.019 kb on - strand, within AO356_00400 at 80.019 kb on - strand, within AO356_00400 at 80.096 kb on + strand, within AO356_00400 at 80.097 kb on - strand, within AO356_00400 at 80.097 kb on - strand, within AO356_00400 at 80.097 kb on - strand, within AO356_00400 at 80.097 kb on - strand, within AO356_00400 at 80.345 kb on + strand, within AO356_00400 at 80.346 kb on - strand, within AO356_00400 at 80.346 kb on - strand, within AO356_00400 at 80.534 kb on - strand, within AO356_00400
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 77,911 + AO356_00390 0.57 +0.4 77,911 + AO356_00390 0.57 -0.2 77,911 + AO356_00390 0.57 -0.1 77,912 - AO356_00390 0.57 -0.7 77,912 - AO356_00390 0.57 +0.5 77,912 - AO356_00390 0.57 -0.4 77,912 - AO356_00390 0.57 +0.5 77,929 + AO356_00390 0.58 -0.3 77,929 + AO356_00390 0.58 +0.9 77,930 - AO356_00390 0.58 +0.5 78,217 + AO356_00390 0.73 +0.2 78,218 - AO356_00390 0.73 +0.7 78,225 + AO356_00390 0.74 +2.0 78,225 + AO356_00390 0.74 +1.2 78,226 - AO356_00390 0.74 +0.4 78,308 - AO356_00390 0.78 +0.4 78,361 + AO356_00390 0.81 -0.9 78,362 - AO356_00390 0.81 +0.3 78,362 - AO356_00390 0.81 +0.7 78,368 - AO356_00390 0.81 +0.4 78,368 - AO356_00390 0.81 +0.2 78,368 - AO356_00390 0.81 +0.4 78,368 - AO356_00390 0.81 -0.0 78,409 + AO356_00390 0.83 +0.4 78,410 - AO356_00390 0.84 -1.5 78,527 - AO356_00390 0.90 -0.4 78,529 + AO356_00390 0.90 +0.1 78,529 + AO356_00390 0.90 +1.0 78,544 + +0.5 78,544 + -0.0 78,544 + +0.3 78,544 + -0.4 78,545 - +0.3 78,545 - +0.2 78,548 - +0.4 78,726 + +0.2 78,726 + +0.3 78,726 + +0.5 78,726 + +0.8 78,727 - -0.0 78,727 - +0.4 78,727 - +0.4 78,727 - +1.5 78,729 - +0.1 78,951 + AO356_00395 0.22 +0.5 78,951 + AO356_00395 0.22 +0.4 78,951 + AO356_00395 0.22 +0.5 78,952 - AO356_00395 0.22 -0.2 79,002 + AO356_00395 0.27 -0.5 79,003 - AO356_00395 0.27 +0.9 79,003 - AO356_00395 0.27 +0.0 79,003 - AO356_00395 0.27 +0.7 79,117 - AO356_00395 0.38 -0.1 79,449 + AO356_00395 0.69 +1.4 79,449 + AO356_00395 0.69 +0.3 79,450 - AO356_00395 0.69 +0.2 79,497 + AO356_00395 0.74 +0.8 79,498 - AO356_00395 0.74 -0.7 79,629 + AO356_00395 0.86 +0.2 79,728 + +1.1 79,728 + +0.1 79,926 - AO356_00400 0.15 +0.7 79,940 + AO356_00400 0.16 +0.5 80,018 + AO356_00400 0.24 -0.5 80,018 + AO356_00400 0.24 -0.3 80,019 - AO356_00400 0.24 +0.2 80,019 - AO356_00400 0.24 -0.6 80,096 + AO356_00400 0.31 +1.7 80,097 - AO356_00400 0.31 -0.1 80,097 - AO356_00400 0.31 -0.5 80,097 - AO356_00400 0.31 +0.5 80,097 - AO356_00400 0.31 +0.2 80,345 + AO356_00400 0.56 +0.2 80,346 - AO356_00400 0.56 +0.3 80,346 - AO356_00400 0.56 +0.3 80,534 - AO356_00400 0.74 +1.0
Or see this region's nucleotide sequence