Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3730 and Shew_3731 are separated by 101 nucleotides Shew_3731 and Shew_3732 are separated by 137 nucleotides Shew_3732 and Shew_3733 are separated by 57 nucleotides Shew_3733 and Shew_3734 are separated by 2 nucleotides
Shew_3730: Shew_3730 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 4,443,595 to 4,444,152
_3730
Shew_3731: Shew_3731 - DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq), at 4,444,254 to 4,444,817
_3731
Shew_3732: Shew_3732 - collagenase (RefSeq), at 4,444,955 to 4,446,766
_3732
Shew_3733: Shew_3733 - hypothetical protein (RefSeq), at 4,446,824 to 4,447,297
_3733
Shew_3734: Shew_3734 - DNA protecting protein DprA (RefSeq), at 4,447,300 to 4,448,319
_3734
Position (kb) 4444
4445
4446
4447 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4444.209 kb on - strand at 4444.242 kb on + strand at 4444.264 kb on + strand at 4444.272 kb on - strand at 4444.616 kb on - strand, within Shew_3731 at 4444.716 kb on + strand, within Shew_3731 at 4444.747 kb on + strand, within Shew_3731 at 4444.772 kb on + strand at 4444.857 kb on + strand at 4445.054 kb on - strand at 4445.054 kb on - strand at 4445.156 kb on + strand, within Shew_3732 at 4445.538 kb on - strand, within Shew_3732 at 4445.583 kb on - strand, within Shew_3732 at 4445.619 kb on + strand, within Shew_3732 at 4445.691 kb on + strand, within Shew_3732 at 4445.765 kb on - strand, within Shew_3732 at 4445.811 kb on + strand, within Shew_3732 at 4445.836 kb on + strand, within Shew_3732 at 4445.854 kb on + strand, within Shew_3732 at 4445.961 kb on + strand, within Shew_3732 at 4445.961 kb on + strand, within Shew_3732 at 4445.985 kb on + strand, within Shew_3732 at 4445.985 kb on + strand, within Shew_3732 at 4445.993 kb on - strand, within Shew_3732 at 4446.005 kb on - strand, within Shew_3732 at 4446.005 kb on - strand, within Shew_3732 at 4446.005 kb on - strand, within Shew_3732 at 4446.217 kb on + strand, within Shew_3732 at 4446.266 kb on + strand, within Shew_3732 at 4446.324 kb on + strand, within Shew_3732 at 4446.410 kb on - strand, within Shew_3732 at 4446.481 kb on - strand, within Shew_3732 at 4446.519 kb on + strand, within Shew_3732 at 4446.519 kb on + strand, within Shew_3732 at 4446.527 kb on - strand, within Shew_3732 at 4446.527 kb on - strand, within Shew_3732 at 4446.527 kb on - strand, within Shew_3732 at 4446.602 kb on + strand at 4446.947 kb on - strand, within Shew_3733 at 4446.949 kb on + strand, within Shew_3733 at 4446.997 kb on + strand, within Shew_3733 at 4447.029 kb on - strand, within Shew_3733 at 4447.059 kb on + strand, within Shew_3733 at 4447.080 kb on + strand, within Shew_3733 at 4447.210 kb on + strand, within Shew_3733 at 4447.256 kb on - strand at 4447.450 kb on + strand, within Shew_3734 at 4447.450 kb on + strand, within Shew_3734 at 4447.541 kb on + strand, within Shew_3734 at 4447.612 kb on + strand, within Shew_3734 at 4447.620 kb on - strand, within Shew_3734 at 4447.620 kb on - strand, within Shew_3734
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 4,444,209 - +1.0 4,444,242 + -2.3 4,444,264 + +1.4 4,444,272 - -2.2 4,444,616 - Shew_3731 0.64 -1.4 4,444,716 + Shew_3731 0.82 +1.4 4,444,747 + Shew_3731 0.87 -0.9 4,444,772 + -1.3 4,444,857 + -2.6 4,445,054 - +1.2 4,445,054 - +0.0 4,445,156 + Shew_3732 0.11 -0.1 4,445,538 - Shew_3732 0.32 +0.3 4,445,583 - Shew_3732 0.35 +1.2 4,445,619 + Shew_3732 0.37 +1.7 4,445,691 + Shew_3732 0.41 +1.7 4,445,765 - Shew_3732 0.45 +1.3 4,445,811 + Shew_3732 0.47 +0.1 4,445,836 + Shew_3732 0.49 -1.6 4,445,854 + Shew_3732 0.50 -0.1 4,445,961 + Shew_3732 0.56 -1.4 4,445,961 + Shew_3732 0.56 -0.7 4,445,985 + Shew_3732 0.57 +0.4 4,445,985 + Shew_3732 0.57 +0.4 4,445,993 - Shew_3732 0.57 +0.5 4,446,005 - Shew_3732 0.58 +0.5 4,446,005 - Shew_3732 0.58 +0.4 4,446,005 - Shew_3732 0.58 -0.7 4,446,217 + Shew_3732 0.70 +0.4 4,446,266 + Shew_3732 0.72 -0.5 4,446,324 + Shew_3732 0.76 +1.5 4,446,410 - Shew_3732 0.80 +0.3 4,446,481 - Shew_3732 0.84 +0.2 4,446,519 + Shew_3732 0.86 +0.1 4,446,519 + Shew_3732 0.86 +0.4 4,446,527 - Shew_3732 0.87 +0.1 4,446,527 - Shew_3732 0.87 +0.2 4,446,527 - Shew_3732 0.87 -0.4 4,446,602 + +0.4 4,446,947 - Shew_3733 0.26 -2.2 4,446,949 + Shew_3733 0.26 -0.4 4,446,997 + Shew_3733 0.36 -0.8 4,447,029 - Shew_3733 0.43 -0.8 4,447,059 + Shew_3733 0.50 +1.4 4,447,080 + Shew_3733 0.54 +0.4 4,447,210 + Shew_3733 0.81 -3.5 4,447,256 - -0.2 4,447,450 + Shew_3734 0.15 -2.4 4,447,450 + Shew_3734 0.15 -0.4 4,447,541 + Shew_3734 0.24 +0.0 4,447,612 + Shew_3734 0.31 +1.1 4,447,620 - Shew_3734 0.31 -0.1 4,447,620 - Shew_3734 0.31 +0.1
Or see this region's nucleotide sequence