Strain Fitness in Shewanella loihica PV-4 around Shew_3025

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3024 and Shew_3025 are separated by 55 nucleotidesShew_3025 and Shew_3026 overlap by 1 nucleotides Shew_3024: Shew_3024 - amidohydrolase 3 (RefSeq), at 3,590,943 to 3,592,613 _3024 Shew_3025: Shew_3025 - hypothetical protein (RefSeq), at 3,592,669 to 3,594,180 _3025 Shew_3026: Shew_3026 - hypothetical protein (RefSeq), at 3,594,180 to 3,595,832 _3026 Position (kb) 3592 3593 3594 3595Strain fitness (log2 ratio) -1 0 1at 3592.376 kb on - strand, within Shew_3024at 3592.420 kb on + strand, within Shew_3024at 3592.868 kb on + strand, within Shew_3025at 3593.052 kb on + strand, within Shew_3025at 3593.073 kb on + strand, within Shew_3025at 3593.081 kb on - strand, within Shew_3025at 3593.408 kb on + strand, within Shew_3025at 3593.408 kb on + strand, within Shew_3025at 3593.811 kb on + strand, within Shew_3025at 3593.819 kb on - strand, within Shew_3025at 3593.844 kb on - strand, within Shew_3025at 3593.893 kb on + strand, within Shew_3025at 3593.901 kb on - strand, within Shew_3025at 3593.961 kb on + strand, within Shew_3025at 3594.104 kb on + strandat 3594.295 kb on + strandat 3594.562 kb on - strand, within Shew_3026at 3594.618 kb on - strand, within Shew_3026at 3594.633 kb on + strand, within Shew_3026at 3595.123 kb on + strand, within Shew_3026

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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3,592,376 - Shew_3024 0.86 +1.6
3,592,420 + Shew_3024 0.88 -1.3
3,592,868 + Shew_3025 0.13 -0.7
3,593,052 + Shew_3025 0.25 +0.4
3,593,073 + Shew_3025 0.27 +0.2
3,593,081 - Shew_3025 0.27 -0.0
3,593,408 + Shew_3025 0.49 -0.3
3,593,408 + Shew_3025 0.49 -0.6
3,593,811 + Shew_3025 0.76 +0.1
3,593,819 - Shew_3025 0.76 +0.4
3,593,844 - Shew_3025 0.78 -0.1
3,593,893 + Shew_3025 0.81 -1.4
3,593,901 - Shew_3025 0.81 -0.1
3,593,961 + Shew_3025 0.85 -0.1
3,594,104 + +0.2
3,594,295 + -1.7
3,594,562 - Shew_3026 0.23 +0.4
3,594,618 - Shew_3026 0.26 -0.3
3,594,633 + Shew_3026 0.27 +0.5
3,595,123 + Shew_3026 0.57 -0.2

Or see this region's nucleotide sequence