Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2893 and Shew_2894 are separated by 157 nucleotides Shew_2894 and Shew_2895 overlap by 4 nucleotides Shew_2895 and Shew_2896 are separated by 146 nucleotides
Shew_2893: Shew_2893 - nucleotide-binding protein (RefSeq), at 3,431,832 to 3,432,317
_2893
Shew_2894: Shew_2894 - VanZ family protein (RefSeq), at 3,432,475 to 3,432,855
_2894
Shew_2895: Shew_2895 - 2-dehydropantoate 2-reductase (RefSeq), at 3,432,852 to 3,433,772
_2895
Shew_2896: Shew_2896 - sodium:neurotransmitter symporter (RefSeq), at 3,433,919 to 3,435,430
_2896
Position (kb)
3432
3433
3434 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3431.865 kb on + strand at 3431.963 kb on + strand, within Shew_2893 at 3432.026 kb on + strand, within Shew_2893 at 3432.051 kb on + strand, within Shew_2893 at 3432.111 kb on - strand, within Shew_2893 at 3432.462 kb on + strand at 3433.099 kb on - strand, within Shew_2895 at 3433.183 kb on + strand, within Shew_2895 at 3433.191 kb on - strand, within Shew_2895 at 3433.222 kb on + strand, within Shew_2895 at 3433.224 kb on - strand, within Shew_2895 at 3433.320 kb on + strand, within Shew_2895 at 3433.373 kb on - strand, within Shew_2895 at 3433.373 kb on - strand, within Shew_2895 at 3433.395 kb on - strand, within Shew_2895 at 3433.655 kb on + strand, within Shew_2895 at 3433.696 kb on - strand at 3433.779 kb on + strand at 3433.779 kb on + strand at 3433.779 kb on + strand at 3433.787 kb on - strand at 3433.787 kb on - strand at 3433.787 kb on - strand at 3433.946 kb on - strand at 3434.023 kb on - strand at 3434.154 kb on + strand, within Shew_2896 at 3434.545 kb on - strand, within Shew_2896 at 3434.587 kb on + strand, within Shew_2896
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 3,431,865 + +1.2 3,431,963 + Shew_2893 0.27 -0.5 3,432,026 + Shew_2893 0.40 -1.1 3,432,051 + Shew_2893 0.45 +2.5 3,432,111 - Shew_2893 0.57 -1.0 3,432,462 + +0.8 3,433,099 - Shew_2895 0.27 -1.3 3,433,183 + Shew_2895 0.36 -3.4 3,433,191 - Shew_2895 0.37 +0.3 3,433,222 + Shew_2895 0.40 -1.5 3,433,224 - Shew_2895 0.40 -1.5 3,433,320 + Shew_2895 0.51 -0.7 3,433,373 - Shew_2895 0.57 -2.4 3,433,373 - Shew_2895 0.57 -0.9 3,433,395 - Shew_2895 0.59 -3.7 3,433,655 + Shew_2895 0.87 -3.4 3,433,696 - -1.7 3,433,779 + +0.5 3,433,779 + +1.3 3,433,779 + -1.4 3,433,787 - +0.0 3,433,787 - -0.9 3,433,787 - +0.3 3,433,946 - +0.6 3,434,023 - +0.5 3,434,154 + Shew_2896 0.16 +0.2 3,434,545 - Shew_2896 0.41 -0.6 3,434,587 + Shew_2896 0.44 +0.4
Or see this region's nucleotide sequence