Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2858 and Shew_2859 are separated by 20 nucleotides Shew_2859 and Shew_2860 overlap by 25 nucleotides Shew_2860 and Shew_2861 overlap by 4 nucleotides
Shew_2858: Shew_2858 - acetyl-CoA acetyltransferase (RefSeq), at 3,389,550 to 3,390,734
_2858
Shew_2859: Shew_2859 - phosphoglycerate mutase (RefSeq), at 3,390,755 to 3,391,429
_2859
Shew_2860: Shew_2860 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,391,405 to 3,392,703
_2860
Shew_2861: Shew_2861 - aminoglycoside phosphotransferase (RefSeq), at 3,392,700 to 3,393,737
_2861
Position (kb)
3391
3392
3393 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3390.432 kb on + strand, within Shew_2858 at 3391.069 kb on + strand, within Shew_2859 at 3391.668 kb on - strand, within Shew_2860 at 3392.075 kb on - strand, within Shew_2860 at 3392.527 kb on + strand, within Shew_2860 at 3392.818 kb on - strand, within Shew_2861 at 3392.848 kb on + strand, within Shew_2861 at 3392.856 kb on - strand, within Shew_2861 at 3392.961 kb on + strand, within Shew_2861 at 3392.961 kb on + strand, within Shew_2861 at 3393.091 kb on - strand, within Shew_2861 at 3393.139 kb on + strand, within Shew_2861 at 3393.139 kb on + strand, within Shew_2861 at 3393.309 kb on - strand, within Shew_2861 at 3393.369 kb on + strand, within Shew_2861 at 3393.371 kb on + strand, within Shew_2861
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 3,390,432 + Shew_2858 0.74 -0.1 3,391,069 + Shew_2859 0.47 -1.0 3,391,668 - Shew_2860 0.20 +0.0 3,392,075 - Shew_2860 0.52 -1.6 3,392,527 + Shew_2860 0.86 -0.2 3,392,818 - Shew_2861 0.11 -1.1 3,392,848 + Shew_2861 0.14 +1.2 3,392,856 - Shew_2861 0.15 +2.7 3,392,961 + Shew_2861 0.25 +1.0 3,392,961 + Shew_2861 0.25 +0.7 3,393,091 - Shew_2861 0.38 +0.3 3,393,139 + Shew_2861 0.42 -0.2 3,393,139 + Shew_2861 0.42 +1.9 3,393,309 - Shew_2861 0.59 +0.4 3,393,369 + Shew_2861 0.64 -3.3 3,393,371 + Shew_2861 0.65 +1.9
Or see this region's nucleotide sequence